Literature DB >> 28378190

Autocatalytic Sets and RNA Secondary Structure.

Wim Hordijk1.   

Abstract

The dominant paradigm in origin of life research is that of an RNA world. However, despite experimental progress towards the spontaneous formation of RNA, the RNA world hypothesis still has its problems. Here, we introduce a novel computational model of chemical reaction networks based on RNA secondary structure and analyze the existence of autocatalytic sub-networks in random instances of this model, by combining two well-established computational tools. Our main results are that (i) autocatalytic sets are highly likely to exist, even for very small reaction networks and short RNA sequences, and (ii) sequence diversity seems to be a more important factor in the formation of autocatalytic sets than sequence length. These findings could shed new light on the probability of the spontaneous emergence of an RNA world as a network of mutually collaborative ribozymes.

Keywords:  Autocatalytic sets; Origin of life; RNA secondary structure; RNA world

Mesh:

Substances:

Year:  2017        PMID: 28378190     DOI: 10.1007/s00239-017-9787-7

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

Review 1.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 2.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

3.  Random biochemical networks: the probability of self-sustaining autocatalysis.

Authors:  Elchanan Mossel; Mike Steel
Journal:  J Theor Biol       Date:  2005-04-07       Impact factor: 2.691

4.  Cross-catalytic replication of an RNA ligase ribozyme.

Authors:  Dong-Eun Kim; Gerald F Joyce
Journal:  Chem Biol       Date:  2004-11

5.  Self-assembly of a group I intron from inactive oligonucleotide fragments.

Authors:  Eric J Hayden; Niles Lehman
Journal:  Chem Biol       Date:  2006-08

6.  Conditions for evolvability of autocatalytic sets: a formal example and analysis.

Authors:  Wim Hordijk; Mike Steel
Journal:  Orig Life Evol Biosph       Date:  2014-12-05       Impact factor: 1.950

Review 7.  Chasing the tail: The emergence of autocatalytic networks.

Authors:  Wim Hordijk; Mike Steel
Journal:  Biosystems       Date:  2016-12-25       Impact factor: 1.973

8.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

9.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

10.  A model for the emergence of cooperation, interdependence, and structure in evolving networks.

Authors:  S Jain; S Krishna
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

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