Literature DB >> 15491125

Understanding nucleic acids using synthetic chemistry.

Steven A Benner1.   

Abstract

This Account describes work done in these laboratories that has used synthetic, physical organic, and biological chemistry to understand the roles played by the nucleobases, sugars, and phosphates of DNA in the molecular recognition processes central to genetics. The number of nucleobases has been increased from 4 to 12, generating an artificially expanded genetic information system. This system is used today in the clinic to monitor the levels of HIV and hepatitis C viruses in patients, helping to manage patient care. Work with uncharged phosphate replacements suggests that a repeating charge is a universal feature of genetic molecules operating in water and will be found in extraterrestrial life (if it is ever encountered). The use of ribose may reflect prebiotic processes in the presence of borate-containing minerals, which stabilize ribose formed from simple organic precursors. A new field, synthetic biology, is emerging on the basis of these experiments, where chemistry mimics biological processes as complicated as Darwinian evolution.

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Year:  2004        PMID: 15491125     DOI: 10.1021/ar040004z

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  112 in total

1.  Synthesis of 8-Heteroaryl-2'-deoxyguanosine Derivatives.

Authors:  Gerard Hobley; Vladimir Gubala; María Del C Rivera-Sánchez; José M Rivera
Journal:  Synlett       Date:  2008-06-01       Impact factor: 2.454

2.  Artificial genetic systems: self-avoiding DNA in PCR and multiplexed PCR.

Authors:  Shuichi Hoshika; Fei Chen; Nicole A Leal; Steven A Benner
Journal:  Angew Chem Int Ed Engl       Date:  2010-07-26       Impact factor: 15.336

Review 3.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

4.  Glyoxylate as a backbone linkage for a prebiotic ancestor of RNA.

Authors:  Heather D Bean; Frank A L Anet; Ian R Gould; Nicholas V Hud
Journal:  Orig Life Evol Biosph       Date:  2006-02       Impact factor: 1.950

5.  N2 -Substituted 2'-Deoxyguanosine Triphosphate Derivatives as Selective Substrates for Human DNA Polymerase κ.

Authors:  A S Prakasha Gowda; Marietta Lee; Thomas E Spratt
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-31       Impact factor: 15.336

6.  Frequency of RNA-RNA interaction in a model of the RNA World.

Authors:  John C Striggles; Matthew B Martin; Francis J Schmidt
Journal:  RNA       Date:  2006-03       Impact factor: 4.942

7.  Polymerase amplification, cloning, and gene expression of benzo-homologous "yDNA" base pairs.

Authors:  Jijumon Chelliserrykattil; Haige Lu; Alex H F Lee; Eric T Kool
Journal:  Chembiochem       Date:  2008-12-15       Impact factor: 3.164

8.  Phosphodeoxyribosyltransferases, designed enzymes for deoxyribonucleotides synthesis.

Authors:  Pierre Alexandre Kaminski; Gilles Labesse
Journal:  J Biol Chem       Date:  2013-01-16       Impact factor: 5.157

9.  Design of a novel molecular beacon: modification of the stem with artificially genetic alphabet.

Authors:  Pinpin Sheng; Zunyi Yang; Youngmi Kim; Yanrong Wu; Weihong Tan; Steven A Benner
Journal:  Chem Commun (Camb)       Date:  2008-09-26       Impact factor: 6.222

10.  Reconstructed evolutionary adaptive paths give polymerases accepting reversible terminators for sequencing and SNP detection.

Authors:  Fei Chen; Eric A Gaucher; Nicole A Leal; Daniel Hutter; Stephanie A Havemann; Sridhar Govindarajan; Eric A Ortlund; Steven A Benner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

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