Literature DB >> 20700833

Measurement of (15)N- (1)H coupling constants in uniformly (15)N-labeled proteins: Application to the photoactive yellow protein.

P Düx1, B Whitehead, R Boelens, R Kaptein, G W Vuister.   

Abstract

A modified HNHB experiment is presented that allows thedetermination of J(NH) coupling constants directly from the ratio ofcross-peak to diagonal-peak intensities. The experiment was applied to thephotoactive yellow protein (PYP) and yielded the magnitude of 117(3)J(NH(beta)) coupling constants. In addition, 29(3)J(NH(alpha(i-1))) coupling constantscould be measured, providing information about the backbone angle psi.These data, in conjunction with the magnitudes of the(3)J(H(N)H(alpha)) coupling constantsobtained from the HNHA spectrum, effectively discriminate the twopossibilities for the stereospecific assignment of theH(alpha) resonances in glycine residues. For all eight glycineresidues in PYP that were not subject to conformational averaging and hadnon-degenerate H(alpha) resonance frequencies, the J-couplingdata, together with limited NOE data, yielded the stereospecific assignmentof the H(alpha) resonances for these residues. In addition,reliable and precise phi,psi dihedral constraints were also derived forthese residues from the J-coupling data.

Entities:  

Year:  1997        PMID: 20700833     DOI: 10.1023/A:1018393225804

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  Determination of H(N),H (α) and H (N),C' coupling constants in (13)C, (15)N-labeled proteins.

Authors:  R Weisemann; H Rüterjans; H Schwalbe; J Schleucher; W Bermel; C Griesinger
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

2.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 3.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation.

Authors:  A Bax; G W Vuister; S Grzesiek; F Delaglio; A C Wang; R Tschudin; G Zhu
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

4.  Conformation of valine side chains in ribonuclease T1 determined by NMR studies of homonuclear and heteronuclear 3J coupling constants.

Authors:  Y Karimi-Nejad; J M Schmidt; H Rüterjans; H Schwalbe; C Greisinger
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

5.  Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure.

Authors:  A Pardi; M Billeter; K Wüthrich
Journal:  J Mol Biol       Date:  1984-12-15       Impact factor: 5.469

6.  Measurement of two- and three-bond 13C-1H J couplings to the C delta carbons of leucine residues in staphylococcal nuclease.

Authors:  G W Vuister; T Yamazaki; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1993-05       Impact factor: 2.835

7.  Stereospecific assignments and chi 1 rotamers for FKBP when bound to ascomycin from 3JH alpha,H beta and 3HN,H beta coupling constants.

Authors:  R X Xu; E T Olejniczak; S W Fesik
Journal:  FEBS Lett       Date:  1992-06-29       Impact factor: 4.124

8.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

  8 in total
  10 in total

1.  MQ-HNCO-TROSY for the measurement of scalar and residual dipolar couplings in larger proteins: application to a 557-residue IgFLNa16-21.

Authors:  Sampo Mäntylahti; Outi Koskela; Pengju Jiang; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-08       Impact factor: 2.835

2.  Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.

Authors:  Ravi Pratap Barnwal; Ashok K Rout; Kandala V R Chary; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2007-10-04       Impact factor: 2.835

3.  Structural similarity between defense peptide from wheat and scorpion neurotoxin permits rational functional design.

Authors:  Antonina A Berkut; Dinara R Usmanova; Steve Peigneur; Peter B Oparin; Konstantin S Mineev; Tatyana I Odintsova; Jan Tytgat; Alexander S Arseniev; Eugene V Grishin; Alexander A Vassilevski
Journal:  J Biol Chem       Date:  2014-03-26       Impact factor: 5.157

4.  Refined solution structure of the dimeric N-terminal HHCC domain of HIV-2 integrase.

Authors:  A P Eijkelenboom; F M van den Ent; R Wechselberger; R H Plasterk; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

5.  Protein surface topography as a tool to enhance the selective activity of a potassium channel blocker.

Authors:  Antonina A Berkut; Anton O Chugunov; Konstantin S Mineev; Steve Peigneur; Valentin M Tabakmakher; Nikolay A Krylov; Peter B Oparin; Alyona F Lihonosova; Ekaterina V Novikova; Alexander S Arseniev; Eugene V Grishin; Jan Tytgat; Roman G Efremov; Alexander A Vassilevski
Journal:  J Biol Chem       Date:  2019-09-18       Impact factor: 5.157

6.  NMR structure determination of the tetramerization domain of the Mnt repressor: An asymmetric alpha-helical assembly in slow exchange.

Authors:  I M Nooren; A V George; R Kaptein; R T Sauer; R Boelens
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

7.  Protein structure elucidation from NMR proton densities.

Authors:  Alexander Grishaev; Miguel Llinas
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

8.  Dynamic alpha-helix structure of micelle-bound human amylin.

Authors:  Sharadrao M Patil; Shihao Xu; Sarah R Sheftic; Andrei T Alexandrescu
Journal:  J Biol Chem       Date:  2009-02-24       Impact factor: 5.157

9.  Data describing the solution structure of the WW3* domain from human Nedd4-1.

Authors:  Vineet Panwalkar; Marianne Schulte; Justin Lecher; Matthias Stoldt; Dieter Willbold; Andrew J Dingley
Journal:  Data Brief       Date:  2016-06-22

10.  Spatial Structure of NanoFAST in the Apo State and in Complex with its Fluorogen HBR-DOM2.

Authors:  Vladislav A Lushpa; Nadezhda S Baleeva; Sergey A Goncharuk; Marina V Goncharuk; Alexander S Arseniev; Mikhail S Baranov; Konstantin S Mineev
Journal:  Int J Mol Sci       Date:  2022-09-26       Impact factor: 6.208

  10 in total

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