Literature DB >> 17914658

Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.

Ravi Pratap Barnwal1, Ashok K Rout, Kandala V R Chary, Hanudatta S Atreya.   

Abstract

We present two NMR experiments, (3,2)D HNHA and (3,2)D HNHB, for rapid and accurate measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides based on the principle of G-matrix Fourier transform NMR spectroscopy and quantitative J-correlation. These experiments, which facilitate fast acquisition of three-dimensional data with high spectral/digital resolution and chemical shift dispersion, will provide renewed opportunities to utilize them for sequence specific resonance assignments, estimation/characterization of secondary structure with/without prior knowledge of resonance assignments, stereospecific assignment of prochiral groups and 3D structure determination, refinement and validation. Taken together, these experiments have a wide range of applications from structural genomics projects to studying structure and folding in polypeptides.

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Year:  2007        PMID: 17914658     DOI: 10.1007/s10858-007-9200-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

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Review 6.  Chemical shifts as a tool for structure determination.

Authors:  D S Wishart; B D Sykes
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Review 7.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation.

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8.  The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.

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Journal:  J Magn Reson B       Date:  1994-05

9.  Using neural network predicted secondary structure information in automatic protein NMR assignment.

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  10 in total

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8.  NMR structure of an acyl-carrier protein from Borrelia burgdorferi.

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10.  Guanidine-HCl dependent structural unfolding of M-crystallin: fluctuating native state like topologies and intermolecular association.

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  10 in total

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