Literature DB >> 20373735

Changes in transmembrane helix alignment by arginine residues revealed by solid-state NMR experiments and coarse-grained MD simulations.

Vitaly V Vostrikov1, Benjamin A Hall, Denise V Greathouse, Roger E Koeppe, Mark S P Sansom.   

Abstract

Independent experimental and computational approaches show agreement concerning arginine/membrane interactions when a single arginine is introduced at selected positions within the membrane-spanning region of acetyl-GGALW(5)LALALAL(12)AL(14)ALALW(19)LAGA-ethanolamide, designated GWALP23. Peptide sequence isomers having Arg in position 12 or position 14 display markedly different behaviors, as deduced by both solid-state NMR experiments and coarse-grained molecular dynamics (CG-MD) simulations. With respect to the membrane normal of DOPC or DPPC lipid bilayer membranes, GWALP23-R14 shows one major state whose apparent average tilt is approximately 10 degrees greater than that of GWALP23. The presence of R14 furthermore induces bilayer thinning and peptide displacement to "lift" the charged guanidinium toward the bilayer surface. By contrast, GWALP23-R12 exhibits multiple states that are in slow exchange on the NMR time scale, with CG-MD simulations indicating two distinct positions with different screw rotation angles in the membrane, along with an increased tendency to exit the lipid bilayer.

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Year:  2010        PMID: 20373735      PMCID: PMC2888137          DOI: 10.1021/ja100598e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  38 in total

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5.  Is arginine charged in a membrane?

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Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

6.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

Review 7.  Sensing voltage across lipid membranes.

Authors:  Kenton J Swartz
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8.  Immobilization of the influenza A M2 transmembrane peptide in virus envelope-mimetic lipid membranes: a solid-state NMR investigation.

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9.  Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

Authors:  Igor Vorobyov; Libo Li; Toby W Allen
Journal:  J Phys Chem B       Date:  2008-07-18       Impact factor: 2.991

10.  PIP(2)-binding site in Kir channels: definition by multiscale biomolecular simulations.

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  43 in total

1.  Protein dynamics elucidated by NMR technique.

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2.  Exploring peptide-membrane interactions with coarse-grained MD simulations.

Authors:  Benjamin A Hall; Alan P Chetwynd; Mark S P Sansom
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

3.  Membrane insertion of a voltage sensor helix.

Authors:  Chze Ling Wee; Alan Chetwynd; Mark S P Sansom
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

4.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
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5.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

6.  Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

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Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

7.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

8.  Accommodation of a central arginine in a transmembrane peptide by changing the placement of anchor residues.

Authors:  Vitaly V Vostrikov; Benjamin A Hall; Mark S P Sansom; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2012-10-17       Impact factor: 2.991

9.  Ionization Properties of Histidine Residues in the Lipid Bilayer Membrane Environment.

Authors:  Ashley N Martfeld; Denise V Greathouse; Roger E Koeppe
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Review 10.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

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