Literature DB >> 20463854

An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy.

M R Howells1, T Beetz, H N Chapman, C Cui, J M Holton, C J Jacobsen, J Kirz, E Lima, S Marchesini, H Miao, D Sayre, D A Shapiro, J C H Spence, D Starodub.   

Abstract

X-ray diffraction microscopy (XDM) is a new form of x-ray imaging that is being practiced at several third-generation synchrotron-radiation x-ray facilities. Nine years have elapsed since the technique was first introduced and it has made rapid progress in demonstrating high-resolution three-dimensional imaging and promises few-nm resolution with much larger samples than can be imaged in the transmission electron microscope. Both life- and materials-science applications of XDM are intended, and it is expected that the principal limitation to resolution will be radiation damage for life science and the coherent power of available x-ray sources for material science. In this paper we address the question of the role of radiation damage. We use a statistical analysis based on the so-called "dose fractionation theorem" of Hegerl and Hoppe to calculate the dose needed to make an image of a single life-science sample by XDM with a given resolution. We find that for simply-shaped objects the needed dose scales with the inverse fourth power of the resolution and present experimental evidence to support this finding. To determine the maximum tolerable dose we have assembled a number of data taken from the literature plus some measurements of our own which cover ranges of resolution that are not well covered otherwise. The conclusion of this study is that, based on the natural contrast between protein and water and "Rose-criterion" image quality, one should be able to image a frozen-hydrated biological sample using XDM at a resolution of about 10 nm.

Entities:  

Year:  2009        PMID: 20463854      PMCID: PMC2867487          DOI: 10.1016/j.elspec.2008.10.008

Source DB:  PubMed          Journal:  J Electron Spectros Relat Phenomena        ISSN: 0368-2048            Impact factor:   1.957


  39 in total

1.  Characterization of conditions required for X-Ray diffraction experiments with protein microcrystals.

Authors:  R Glaeser; M Facciotti; P Walian; S Rouhani; J Holton; A MacDowell; R Celestre; D Cambie; H Padmore
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

Review 4.  Taking X-ray diffraction to the limit: macromolecular structures from femtosecond X-ray pulses and diffraction microscopy of cells with synchrotron radiation.

Authors:  Jianwei Miao; Henry N Chapman; Janos Kirz; David Sayre; Keith O Hodgson
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

5.  Diffractive imaging of nonperiodic materials with future coherent X-ray sources.

Authors:  Qun Shen; Ivan Bazarov; Pierre Thibault
Journal:  J Synchrotron Radiat       Date:  2004-08-17       Impact factor: 2.616

6.  Wavelength choice for soft x-ray laser holography of biological samples.

Authors:  R A London; M D Rosen; J E Trebes
Journal:  Appl Opt       Date:  1989-08-15       Impact factor: 1.980

Review 7.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

8.  Cryo X-ray microscopy with high spatial resolution in amplitude and phase contrast.

Authors:  G Schneider
Journal:  Ultramicroscopy       Date:  1998-11       Impact factor: 2.689

9.  Transmission microscropy of unmodified biological materials: comparative radiation dosages with electrons and ultrasoft x-ray photons.

Authors:  D Sayre; J Kirz; R Feder; D M Kim; E Spiller
Journal:  Ultramicroscopy       Date:  1977-08       Impact factor: 2.689

Review 10.  Radiation damage in macromolecular cryocrystallography.

Authors:  Raimond B G Ravelli; Elspeth F Garman
Journal:  Curr Opin Struct Biol       Date:  2006-08-30       Impact factor: 6.809

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  115 in total

1.  Structure parameters of synaptic vesicles quantified by small-angle x-ray scattering.

Authors:  Simon Castorph; Dietmar Riedel; Lise Arleth; Michael Sztucki; Reinhard Jahn; Matthew Holt; Tim Salditt
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

2.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy.

Authors:  Huaidong Jiang; Changyong Song; Chien-Chun Chen; Rui Xu; Kevin S Raines; Benjamin P Fahimian; Chien-Hung Lu; Ting-Kuo Lee; Akio Nakashima; Jun Urano; Tetsuya Ishikawa; Fuyuhiko Tamanoi; Jianwei Miao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-04       Impact factor: 11.205

3.  Microscopy: A new phase for X-ray imaging.

Authors:  Henry N Chapman
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

4.  Ptychographic X-ray computed tomography at the nanoscale.

Authors:  Martin Dierolf; Andreas Menzel; Pierre Thibault; Philipp Schneider; Cameron M Kewish; Roger Wepf; Oliver Bunk; Franz Pfeiffer
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

5.  Nanostructure surveys of macroscopic specimens by small-angle scattering tensor tomography.

Authors:  Marianne Liebi; Marios Georgiadis; Andreas Menzel; Philipp Schneider; Joachim Kohlbrecher; Oliver Bunk; Manuel Guizar-Sicairos
Journal:  Nature       Date:  2015-11-19       Impact factor: 49.962

6.  Actin bundles cross-linked with α-actinin studied by nanobeam X-ray diffraction.

Authors:  M Töpperwien; M Priebe; T Salditt
Journal:  Eur Biophys J       Date:  2015-12-29       Impact factor: 1.733

7.  Observation of femtosecond X-ray interactions with matter using an X-ray-X-ray pump-probe scheme.

Authors:  Ichiro Inoue; Yuichi Inubushi; Takahiro Sato; Kensuke Tono; Tetsuo Katayama; Takashi Kameshima; Kanade Ogawa; Tadashi Togashi; Shigeki Owada; Yoshiyuki Amemiya; Takashi Tanaka; Toru Hara; Makina Yabashi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-25       Impact factor: 11.205

8.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

9.  Cancer cell classification with coherent diffraction imaging using an extreme ultraviolet radiation source.

Authors:  Michael Zürch; Stefan Foertsch; Mark Matzas; Katharina Pachmann; Rainer Kuth; Christian Spielmann
Journal:  J Med Imaging (Bellingham)       Date:  2014-10-03

10.  Quantitative biological imaging by ptychographic x-ray diffraction microscopy.

Authors:  Klaus Giewekemeyer; Pierre Thibault; Sebastian Kalbfleisch; André Beerlink; Cameron M Kewish; Martin Dierolf; Franz Pfeiffer; Tim Salditt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

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