Literature DB >> 16938450

Radiation damage in macromolecular cryocrystallography.

Raimond B G Ravelli1, Elspeth F Garman.   

Abstract

X-ray radiation damage to cryocooled ( approximately 100 K) macromolecular crystals has emerged as a general problem, especially since the advent of third generation synchrotron undulator sources. Interest in understanding the physical and chemical phenomena behind the observed effects is growing rapidly. The specific structural damage seen in electron density maps has to be accounted for when studying intermediates, and can sometimes be related to biological function. Radiation damage induces non-isomorphism, thus hampering traditional phasing methods. However, specific damage can also be used to obtain phases. With an increased knowledge of expected crystal lifetime, beamline characteristics and types of damage, macromolecular crystallographers might soon be able to account for radiation damage in data collection, processing and phasing.

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Year:  2006        PMID: 16938450     DOI: 10.1016/j.sbi.2006.08.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  50 in total

Review 1.  Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2007-11-23       Impact factor: 5.542

2.  A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Authors:  Andrew T Torelli; Jolanta Krucinska; Joseph E Wedekind
Journal:  RNA       Date:  2007-05-08       Impact factor: 4.942

3.  Shoot-and-Trap: use of specific x-ray damage to study structural protein dynamics by temperature-controlled cryo-crystallography.

Authors:  Jacques-Philippe Colletier; Dominique Bourgeois; Benoît Sanson; Didier Fournier; Joel L Sussman; Israel Silman; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-13       Impact factor: 11.205

4.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

5.  Structural and kinetic effects on changes in the CO(2) binding pocket of human carbonic anhydrase II.

Authors:  Dayne West; Chae Un Kim; Chingkuang Tu; Arthur H Robbins; Sol M Gruner; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2012-11-02       Impact factor: 3.162

6.  Optimization of data collection taking radiation damage into account.

Authors:  Gleb P Bourenkov; Alexander N Popov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Carrying out an optimal experiment.

Authors:  Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Know your dose: RADDOSE.

Authors:  Karthik S Paithankar; Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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