Literature DB >> 15139809

Taking X-ray diffraction to the limit: macromolecular structures from femtosecond X-ray pulses and diffraction microscopy of cells with synchrotron radiation.

Jianwei Miao1, Henry N Chapman, Janos Kirz, David Sayre, Keith O Hodgson.   

Abstract

Recent work is extending the methodology of X-ray crystallography to the structure determination of noncrystalline specimens. The phase problem is solved using the oversampling method, which takes advantage of "continuous" diffraction patterns from noncrystalline specimens. Here we review the principle of this newly developed technique and discuss the ongoing experiments of imaging nonperiodic objects, such as cells and cellular structures, using coherent and bright X rays produced by third-generation synchrotron sources. In the longer run, the technique may be applicable to image single biomolecules using anticipated X-ray free electron lasers. Here, computer simulations have so far demonstrated two important steps: (a) by using an extremely intense femtosecond X-ray pulse, a diffraction pattern can be recorded from a macromolecule before radiation damage manifests itself; and (b) the phase information can be retrieved in an ab initio fashion from a set of calculated noisy diffraction patterns of single protein molecules.

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Year:  2004        PMID: 15139809     DOI: 10.1146/annurev.biophys.33.110502.140405

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  8 in total

1.  Imaging proteins at the single-molecule level.

Authors:  Jean-Nicolas Longchamp; Stephan Rauschenbach; Sabine Abb; Conrad Escher; Tatiana Latychevskaia; Klaus Kern; Hans-Werner Fink
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-13       Impact factor: 11.205

2.  Time-, frequency-, and wavevector-resolved x-ray diffraction from single molecules.

Authors:  Kochise Bennett; Jason D Biggs; Yu Zhang; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Chem Phys       Date:  2014-05-28       Impact factor: 3.488

3.  An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy.

Authors:  M R Howells; T Beetz; H N Chapman; C Cui; J M Holton; C J Jacobsen; J Kirz; E Lima; S Marchesini; H Miao; D Sayre; D A Shapiro; J C H Spence; D Starodub
Journal:  J Electron Spectros Relat Phenomena       Date:  2009-03-01       Impact factor: 1.957

4.  Exploring the binding pocket for pyridopyrimidine ligands at the CCK1 receptor by molecular docking.

Authors:  Amel Toumi-Maouche; Boubekeur Maouche; Safia Taïri-Kellou; Salima El-Aoufi; Mercedes Martín-Martínez; Rosario González-Muñiz; Daniel Fourmy; Bernard Maigret
Journal:  J Mol Model       Date:  2008-02-20       Impact factor: 1.810

5.  Identification of ligand binding site on RXRγ using molecular docking and dynamics methods.

Authors:  Peng Zhao; Qing-hua Liao; Cheng-Feng Ren; Jing Wei
Journal:  J Mol Model       Date:  2010-08-26       Impact factor: 1.810

Review 6.  Emerging opportunities in structural biology with X-ray free-electron lasers.

Authors:  Ilme Schlichting; Jianwei Miao
Journal:  Curr Opin Struct Biol       Date:  2012-08-22       Impact factor: 6.809

Review 7.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

8.  Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge.

Authors:  Marcus Gallagher-Jones; Carlos Sato Baraldi Dias; Alan Pryor; Karim Bouchmella; Lingrong Zhao; Yuan Hung Lo; Mateus Borba Cardoso; David Shapiro; Jose Rodriguez; Jianwei Miao
Journal:  Sci Rep       Date:  2017-07-06       Impact factor: 4.379

  8 in total

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