Literature DB >> 20018650

Quantitative biological imaging by ptychographic x-ray diffraction microscopy.

Klaus Giewekemeyer1, Pierre Thibault, Sebastian Kalbfleisch, André Beerlink, Cameron M Kewish, Martin Dierolf, Franz Pfeiffer, Tim Salditt.   

Abstract

Recent advances in coherent x-ray diffractive imaging have paved the way to reliable and quantitative imaging of noncompact specimens at the nanometer scale. Introduced a year ago, an advanced implementation of ptychographic coherent diffractive imaging has removed much of the previous limitations regarding sample preparation and illumination conditions. Here, we apply this recent approach toward structure determination at the nanoscale to biological microscopy. We show that the projected electron density of unstained and unsliced freeze-dried cells of the bacterium Deinococcus radiodurans can be derived from the reconstructed phase in a straightforward and reproducible way, with quantified and small errors. Thus, the approach may contribute in the future to the understanding of the highly disputed nucleoid structure of bacterial cells. In the present study, the estimated resolution for the cells was 85 nm (half-period length), whereas 50-nm resolution was demonstrated for lithographic test structures. With respect to the diameter of the pinhole used to illuminate the samples, a superresolution of about 15 was achieved for the cells and 30 for the test structures, respectively. These values should be assessed in view of the low dose applied on the order of approximately 1.3x10(5) Gy, and were shown to scale with photon fluence.

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Year:  2009        PMID: 20018650      PMCID: PMC2795774          DOI: 10.1073/pnas.0905846107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction.

Authors:  Jianwei Miao; Keith O Hodgson; Tetsuya Ishikawa; Carolyn A Larabell; Mark A LeGros; Yoshinori Nishino
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

2.  Soft X-ray microscopy at a spatial resolution better than 15 nm.

Authors:  Weilun Chao; Bruce D Harteneck; J Alexander Liddle; Erik H Anderson; David T Attwood
Journal:  Nature       Date:  2005-06-30       Impact factor: 49.962

3.  Fresnel coherent diffractive imaging.

Authors:  G J Williams; H M Quiney; B B Dhal; C Q Tran; K A Nugent; A G Peele; D Paterson; M D de Jonge
Journal:  Phys Rev Lett       Date:  2006-07-14       Impact factor: 9.161

4.  Effectiveness of iterative algorithms in recovering phase in the presence of noise.

Authors:  Garth Williams; Mark Pfeifer; Ivan Vartanyants; Ian Robinson
Journal:  Acta Crystallogr A       Date:  2006-12-19       Impact factor: 2.290

5.  Quantitative phase measurement in coherent diffraction imaging.

Authors:  J N Clark; G J Williams; H M Quiney; L Whitehead; M D de Jonge; E Hanssen; M Altissimo; K A Nugent; A G Peele
Journal:  Opt Express       Date:  2008-03-03       Impact factor: 3.894

6.  Phase retrieval with transverse translation diversity: a nonlinear optimization approach.

Authors:  Manuel Guizar-Sicairos; James R Fienup
Journal:  Opt Express       Date:  2008-05-12       Impact factor: 3.894

Review 7.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

8.  Concentration evaluation of chromatin in unstained resin-embedded sections by means of low-dose ratio-contrast imaging in STEM.

Authors:  B Bohrmann; M Haider; E Kellenberger
Journal:  Ultramicroscopy       Date:  1993-02       Impact factor: 2.689

9.  Imaging of the intracellular topography of copper with a fluorescent sensor and by synchrotron x-ray fluorescence microscopy.

Authors:  Liuchun Yang; Reagan McRae; Maged M Henary; Raxit Patel; Barry Lai; Stefan Vogt; Christoph J Fahrni
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

10.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

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  48 in total

1.  Three-dimensional high-resolution quantitative microscopy of extended crystals.

Authors:  P Godard; G Carbone; M Allain; F Mastropietro; G Chen; L Capello; A Diaz; T H Metzger; J Stangl; V Chamard
Journal:  Nat Commun       Date:  2011-11-29       Impact factor: 14.919

2.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy.

Authors:  Huaidong Jiang; Changyong Song; Chien-Chun Chen; Rui Xu; Kevin S Raines; Benjamin P Fahimian; Chien-Hung Lu; Ting-Kuo Lee; Akio Nakashima; Jun Urano; Tetsuya Ishikawa; Fuyuhiko Tamanoi; Jianwei Miao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-04       Impact factor: 11.205

3.  Ptychographic X-ray computed tomography at the nanoscale.

Authors:  Martin Dierolf; Andreas Menzel; Pierre Thibault; Philipp Schneider; Cameron M Kewish; Roger Wepf; Oliver Bunk; Franz Pfeiffer
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

4.  Actin bundles cross-linked with α-actinin studied by nanobeam X-ray diffraction.

Authors:  M Töpperwien; M Priebe; T Salditt
Journal:  Eur Biophys J       Date:  2015-12-29       Impact factor: 1.733

5.  Quantitative phase imaging via Fourier ptychographic microscopy.

Authors:  Xiaoze Ou; Roarke Horstmeyer; Changhuei Yang; Guoan Zheng
Journal:  Opt Lett       Date:  2013-11-15       Impact factor: 3.776

6.  Dichroic coherent diffractive imaging.

Authors:  Ashish Tripathi; Jyoti Mohanty; Sebastian H Dietze; Oleg G Shpyrko; Erik Shipton; Eric E Fullerton; Sang Soo Kim; Ian McNulty
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

Review 7.  Synchrotron radiation X-ray diffraction studies on muscle: past, present, and future.

Authors:  Hiroyuki Iwamoto
Journal:  Biophys Rev       Date:  2019-06-15

8.  Measuring spectroscopy and magnetism of extracted and intracellular magnetosomes using soft X-ray ptychography.

Authors:  Xiaohui Zhu; Adam P Hitchcock; Dennis A Bazylinski; Peter Denes; John Joseph; Ulysses Lins; Stefano Marchesini; Hung-Wei Shiu; Tolek Tyliszczak; David A Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-07       Impact factor: 11.205

9.  Soft X-ray spectromicroscopy using ptychography with randomly phased illumination.

Authors:  A M Maiden; G R Morrison; B Kaulich; A Gianoncelli; J M Rodenburg
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy.

Authors:  Changyong Song; Masatoshi Takagi; Jaehyun Park; Rui Xu; Marcus Gallagher-Jones; Naoko Imamoto; Tetsuya Ishikawa
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

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