Literature DB >> 20463000

Group II introns: mobile ribozymes that invade DNA.

Alan M Lambowitz1, Steven Zimmerly.   

Abstract

Group II introns are mobile ribozymes that self-splice from precursor RNAs to yield excised intron lariat RNAs, which then invade new genomic DNA sites by reverse splicing. The introns encode a reverse transcriptase that stabilizes the catalytically active RNA structure for forward and reverse splicing, and afterwards converts the integrated intron RNA back into DNA. The characteristics of group II introns suggest that they or their close relatives were evolutionary ancestors of spliceosomal introns, the spliceosome, and retrotransposons in eukaryotes. Further, their ribozyme-based DNA integration mechanism enabled the development of group II introns into gene targeting vectors ("targetrons"), which have the unique feature of readily programmable DNA target specificity.

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Year:  2011        PMID: 20463000      PMCID: PMC3140690          DOI: 10.1101/cshperspect.a003616

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  153 in total

1.  Mechanism of maturase-promoted group II intron splicing.

Authors:  M Matsuura; J W Noah; A M Lambowitz
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

2.  Structural insights into group II intron catalysis and branch-site selection.

Authors:  Lan Zhang; Jennifer A Doudna
Journal:  Science       Date:  2002-02-21       Impact factor: 47.728

3.  A catalytically active group II intron domain 5 can function in the U12-dependent spliceosome.

Authors:  Girish C Shukla; Richard A Padgett
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

4.  Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns.

Authors:  Navtej Toor; Steven Zimmerly
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

5.  Identification and characterization of bacterial class E group II introns.

Authors:  Nicolás Toro; Maria Dolores Molina-Sánchez; Manuel Fernández-López
Journal:  Gene       Date:  2002-10-16       Impact factor: 3.688

6.  Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets.

Authors:  Kenji Ichiyanagi; Arthur Beauregard; Stacey Lawrence; Dorie Smith; Benoit Cousineau; Marlene Belfort
Journal:  Mol Microbiol       Date:  2002-12       Impact factor: 3.501

7.  Characterization of the C-terminal DNA-binding/DNA endonuclease region of a group II intron-encoded protein.

Authors:  Joseph San Filippo; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2002-12-13       Impact factor: 5.469

8.  Binding of a group II intron-encoded reverse transcriptase/maturase to its high affinity intron RNA binding site involves sequence-specific recognition and autoregulates translation.

Authors:  Ravindra N Singh; Roland J Saldanha; Lisa M D'Souza; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

9.  Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.

Authors:  Yasukazu Nakamura; Takakazu Kaneko; Shusei Sato; Masahiko Ikeuchi; Hiroshi Katoh; Shigemi Sasamoto; Akiko Watanabe; Mayumi Iriguchi; Kumiko Kawashima; Takaharu Kimura; Yoshie Kishida; Chiaki Kiyokawa; Mitsuyo Kohara; Midori Matsumoto; Ai Matsuno; Naomi Nakazaki; Sayaka Shimpo; Masako Sugimoto; Chie Takeuchi; Manabu Yamada; Satoshi Tabata
Journal:  DNA Res       Date:  2002-08-31       Impact factor: 4.458

Review 10.  The take and give between retrotransposable elements and their hosts.

Authors:  Arthur Beauregard; M Joan Curcio; Marlene Belfort
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

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  197 in total

1.  Contribution of base-pairing interactions between group II intron fragments during trans-splicing in vivo.

Authors:  Cecilia Quiroga; Lisa Kronstad; Christine Ritlop; Audrey Filion; Benoit Cousineau
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

2.  Telomerase and retrotransposons: reverse transcriptases that shaped genomes.

Authors:  Marlene Belfort; M Joan Curcio; Neal F Lue
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-20       Impact factor: 11.205

Review 3.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 4.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

Review 5.  Convergent evolution of twintron-like configurations: One is never enough.

Authors:  Mohamed Hafez; Georg Hausner
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Evolution of plant mitochondrial intron-encoded maturases: frequent lineage-specific loss and recurrent intracellular transfer to the nucleus.

Authors:  Wenhu Guo; Jeffrey P Mower
Journal:  J Mol Evol       Date:  2013-08-25       Impact factor: 2.395

7.  Visualizing the ai5γ group IIB intron.

Authors:  Srinivas Somarowthu; Michal Legiewicz; Kevin S Keating; Anna Marie Pyle
Journal:  Nucleic Acids Res       Date:  2013-11-06       Impact factor: 16.971

Review 8.  A novel spliceosome-mediated trans-splicing can change our view on genome complexity of the divergent eukaryote Giardia intestinalis.

Authors:  Ryoma Kamikawa; Yuji Inagaki; Tetsuo Hashimoto
Journal:  Biophys Rev       Date:  2011-10-20

9.  Enhanced group II intron retrohoming in magnesium-deficient Escherichia coli via selection of mutations in the ribozyme core.

Authors:  David M Truong; David J Sidote; Rick Russell; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

Review 10.  Structural Insights into the Mechanism of Group II Intron Splicing.

Authors:  Chen Zhao; Anna Marie Pyle
Journal:  Trends Biochem Sci       Date:  2017-04-21       Impact factor: 13.807

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