Literature DB >> 28438387

Structural Insights into the Mechanism of Group II Intron Splicing.

Chen Zhao1, Anna Marie Pyle2.   

Abstract

While the major architectural features and active-site components of group II introns have been known for almost a decade, information on the individual stages of splicing has been lacking. Recent advances in crystallography and cryo-electron microscopy (cryo-EM) have provided major new insights into the structure of intact lariat introns. Conformational changes that mediate the steps of splicing and retrotransposition are being elucidated, revealing the dynamic, highly coordinated motions that are required for group II intron activity. Finally, these ribozymes can now be viewed in their larger, more natural context as components of holoenzymes that include encoded maturase proteins. These studies expand our understanding of group II intron structural diversity and evolution, while setting the stage for rigorous mechanistic analysis of RNA splicing machines.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Group II intron; RNA structure; maturase; retrotransposition; ribozyme; spliceosome

Mesh:

Substances:

Year:  2017        PMID: 28438387      PMCID: PMC5492998          DOI: 10.1016/j.tibs.2017.03.007

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  70 in total

1.  Mechanism of maturase-promoted group II intron splicing.

Authors:  M Matsuura; J W Noah; A M Lambowitz
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

2.  The generality of self-splicing RNA: relationship to nuclear mRNA splicing.

Authors:  T R Cech
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

Review 3.  On the origin of RNA splicing and introns.

Authors:  P A Sharp
Journal:  Cell       Date:  1985-09       Impact factor: 41.582

4.  Group II intron splicing in vivo by first-step hydrolysis.

Authors:  M Podar; V T Chu; A M Pyle; P S Perlman
Journal:  Nature       Date:  1998-02-26       Impact factor: 49.962

Review 5.  Group II intron lariat: Structural insights into the spliceosome.

Authors:  Jessica K Peters; Navtej Toor
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Metal ion binding sites in a group II intron core.

Authors:  R K Sigel; A Vaidya; A M Pyle
Journal:  Nat Struct Biol       Date:  2000-12

7.  Structure of a yeast step II catalytically activated spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Rui Bai; Gaoxingyu Huang; Yigong Shi
Journal:  Science       Date:  2016-12-15       Impact factor: 47.728

8.  Structural basis for exon recognition by a group II intron.

Authors:  Navtej Toor; Kanagalaghatta Rajashankar; Kevin S Keating; Anna Marie Pyle
Journal:  Nat Struct Mol Biol       Date:  2008-10-26       Impact factor: 15.369

9.  Predicted group II intron lineages E and F comprise catalytically active ribozymes.

Authors:  Vivien Nagy; Nathan Pirakitikulr; Katherine Ismei Zhou; Isabel Chillón; Jerome Luo; Anna Marie Pyle
Journal:  RNA       Date:  2013-07-23       Impact factor: 4.942

10.  Principles of ion recognition in RNA: insights from the group II intron structures.

Authors:  Marco Marcia; Anna Marie Pyle
Journal:  RNA       Date:  2014-02-25       Impact factor: 4.942

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  18 in total

1.  B2 and ALU retrotransposons are self-cleaving ribozymes whose activity is enhanced by EZH2.

Authors:  Alfredo J Hernandez; Athanasios Zovoilis; Catherine Cifuentes-Rojas; Lu Han; Bojan Bujisic; Jeannie T Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

Review 2.  Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations.

Authors:  Giulia Palermo; Lorenzo Casalino; Alessandra Magistrato; J Andrew McCammon
Journal:  J Struct Biol       Date:  2019-03-15       Impact factor: 2.867

3.  Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.

Authors:  Deepak Koirala; Sandip A Shelke; Marcel Dupont; Stormy Ruiz; Saurja DasGupta; Lucas J Bailey; Steven A Benner; Joseph A Piccirilli
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

Review 4.  Mobile Group II Introns as Ancestral Eukaryotic Elements.

Authors:  Olga Novikova; Marlene Belfort
Journal:  Trends Genet       Date:  2017-08-14       Impact factor: 11.639

5.  Discovery of highly reactive self-splicing group II introns within the mitochondrial genomes of human pathogenic fungi.

Authors:  Tianshuo Liu; Anna M Pyle
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

6.  Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding.

Authors:  Michèle C Erat; Emina Besic; Michael Oberhuber; Silke Johannsen; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

7.  U5 snRNA Interactions With Exons Ensure Splicing Precision.

Authors:  Olga V Artemyeva-Isman; Andrew C G Porter
Journal:  Front Genet       Date:  2021-07-02       Impact factor: 4.599

Review 8.  Contribution of Mobile Group II Introns to Sinorhizobium meliloti Genome Evolution.

Authors:  Nicolás Toro; Francisco Martínez-Abarca; María D Molina-Sánchez; Fernando M García-Rodríguez; Rafael Nisa-Martínez
Journal:  Front Microbiol       Date:  2018-04-04       Impact factor: 5.640

9.  Branch site bulge conformations in domain 6 determine functional sugar puckers in group II intron splicing.

Authors:  Raphael Plangger; Michael Andreas Juen; Thomas Philipp Hoernes; Felix Nußbaumer; Johannes Kremser; Elisabeth Strebitzer; David Klingler; Kevin Erharter; Martin Tollinger; Matthias David Erlacher; Christoph Kreutz
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

Review 10.  Structural dynamics of the N-terminal domain and the Switch loop of Prp8 during spliceosome assembly and activation.

Authors:  Xu Jia; Chengfu Sun
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

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