Literature DB >> 12459272

Identification and characterization of bacterial class E group II introns.

Nicolás Toro1, Maria Dolores Molina-Sánchez, Manuel Fernández-López.   

Abstract

Group II introns are catalytic RNAs and mobile genetic elements. Phylogenetic characterization of group II intron-encoded reverse transcriptases (RTs) established seven classes: the mitochondrial class, chloroplast-like classes 1 and 2, and bacterial classes A, B, C, and D. In this study, we identified and characterized a new bacterial class of group II introns, bacterial class E, on the basis of phylogenetic analysis of the intron-encoded protein (IEP) RT and determination of a consensus intron RNA structure.

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Year:  2002        PMID: 12459272     DOI: 10.1016/s0378-1119(02)01079-x

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  15 in total

1.  The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming.

Authors:  Francisco Martínez-Abarca; Antonio Barrientos-Durán; Manuel Fernández-López; Nicolás Toro
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

Review 2.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

3.  Group II introns in eubacteria and archaea: ORF-less introns and new varieties.

Authors:  Dawn M Simon; Nicholas A C Clarke; Bonnie A McNeil; Ian Johnson; Davin Pantuso; Lixin Dai; Dinggeng Chai; Steven Zimmerly
Journal:  RNA       Date:  2008-08-01       Impact factor: 4.942

4.  Use of RmInt1, a group IIB intron lacking the intron-encoded protein endonuclease domain, in gene targeting.

Authors:  Fernando M García-Rodríguez; Antonio Barrientos-Durán; Vanessa Díaz-Prado; Manuel Fernández-López; Nicolás Toro
Journal:  Appl Environ Microbiol       Date:  2010-11-29       Impact factor: 4.792

5.  Recent horizontal intron transfer to a chloroplast genome.

Authors:  Elena V Sheveleva; Richard B Hallick
Journal:  Nucleic Acids Res       Date:  2004-02-03       Impact factor: 16.971

6.  EcI5, a group IIB intron with high retrohoming frequency: DNA target site recognition and use in gene targeting.

Authors:  Fanglei Zhuang; Michael Karberg; Jiri Perutka; Alan M Lambowitz
Journal:  RNA       Date:  2009-01-20       Impact factor: 4.942

7.  Database for bacterial group II introns.

Authors:  Manuel A Candales; Adrian Duong; Keyar S Hood; Tony Li; Ryan A E Neufeld; Runda Sun; Bonnie A McNeil; Li Wu; Ashley M Jarding; Steven Zimmerly
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

8.  Dispersion of the RmInt1 group II intron in the Sinorhizobium meliloti genome upon acquisition by conjugative transfer.

Authors:  Rafael Nisa-Martínez; José I Jiménez-Zurdo; Francisco Martínez-Abarca; Estefanía Muñoz-Adelantado; Nicolás Toro
Journal:  Nucleic Acids Res       Date:  2006-12-07       Impact factor: 16.971

9.  Self-splicing of a group IIC intron: 5' exon recognition and alternative 5' splicing events implicate the stem-loop motif of a transcriptional terminator.

Authors:  Navtej Toor; Aaron R Robart; Joshua Christianson; Steven Zimmerly
Journal:  Nucleic Acids Res       Date:  2006-11-27       Impact factor: 16.971

10.  Evolution of group II introns.

Authors:  Steven Zimmerly; Cameron Semper
Journal:  Mob DNA       Date:  2015-04-01
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