Literature DB >> 26513606

Convergent evolution of twintron-like configurations: One is never enough.

Mohamed Hafez1,2, Georg Hausner3.   

Abstract

Introns inserted within introns are commonly referred to as twintrons, however the original definition for twintron implied that splicing of the external member of the twintron could only proceed upon splicing of the internal member. This review examines the various types of twintron-like arrangements that have been reported and assigns them to either nested or twintron categories that are subdivided further into subtypes based on differences of their mode of splicing. Twintron-like arrangements evolved independently by fortuitous events among different types of introns but once formed they offer opportunities for the evolution of new regulatory strategies and/or novel genetic elements.

Keywords:  Twintrons; group I and II introns; intron shuffling; nested introns; ribozymes; spliceosome; tRNA introns

Mesh:

Substances:

Year:  2015        PMID: 26513606      PMCID: PMC4829276          DOI: 10.1080/15476286.2015.1103427

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  119 in total

Review 1.  Emerging clinical applications of RNA.

Authors:  Bruce A Sullenger; Eli Gilboa
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 2.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

Review 3.  Group II introns: structure, folding and splicing mechanism.

Authors:  Olga Fedorova; Nora Zingler
Journal:  Biol Chem       Date:  2007-07       Impact factor: 3.915

Review 4.  The ribozyme core of group II introns: a structure in want of partners.

Authors:  François Michel; Maria Costa; Eric Westhof
Journal:  Trends Biochem Sci       Date:  2009-03-18       Impact factor: 13.807

5.  Spliceosome twin introns in fungal nuclear transcripts.

Authors:  Michel Flipphi; Erzsébet Fekete; Norbert Ag; Claudio Scazzocchio; Levente Karaffa
Journal:  Fungal Genet Biol       Date:  2013-06-19       Impact factor: 3.495

6.  Representation of the secondary and tertiary structure of group I introns.

Authors:  T R Cech; S H Damberger; R R Gutell
Journal:  Nat Struct Biol       Date:  1994-05

7.  Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns.

Authors:  G Mohr; R Rennard; A D Cherniack; J Stryker; A M Lambowitz
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

Review 8.  Structure and activities of group II introns.

Authors:  F Michel; J L Ferat
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

9.  Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene.

Authors:  D W Copertino; R B Hallick
Journal:  EMBO J       Date:  1991-02       Impact factor: 11.598

10.  Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA.

Authors:  Ihab Younis; Kimberly Dittmar; Wei Wang; Shawn W Foley; Michael G Berg; Karen Y Hu; Zhi Wei; Lili Wan; Gideon Dreyfuss
Journal:  Elife       Date:  2013-07-30       Impact factor: 8.140

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  10 in total

1.  A mechanism for a single nucleotide intron shift.

Authors:  Erzsébet Fekete; Michel Flipphi; Norbert Ág; Napsugár Kavalecz; Gustavo Cerqueira; Claudio Scazzocchio; Levente Karaffa
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

2.  Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes.

Authors:  Shu Zhang; Yong-Jie Zhang
Journal:  IMA Fungus       Date:  2019-10-10       Impact factor: 3.515

3.  The mitochondrial genome of Endoconidiophora resinifera is intron rich.

Authors:  Abdullah Zubaer; Alvan Wai; Georg Hausner
Journal:  Sci Rep       Date:  2018-12-04       Impact factor: 4.379

4.  A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss.

Authors:  Napsugár Kavalecz; Norbert Ág; Levente Karaffa; Claudio Scazzocchio; Michel Flipphi; Erzsébet Fekete
Journal:  Sci Rep       Date:  2019-07-09       Impact factor: 4.379

5.  New insights into minor splicing-a transcriptomic analysis of cells derived from TALS patients.

Authors:  Anne-Louise Leutenegger; Sylvie Mazoyer; Patrick Edery; Vincent Lacroix; Audric Cologne; Clara Benoit-Pilven; Alicia Besson; Audrey Putoux; Amandine Campan-Fournier; Michael B Bober; Christine E M De Die-Smulders; Aimee D C Paulussen; Lucile Pinson; Annick Toutain; Chaim M Roifman
Journal:  RNA       Date:  2019-06-07       Impact factor: 4.942

6.  The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales.

Authors:  Abdullah Zubaer; Alvan Wai; Nikita Patel; Jordan Perillo; Georg Hausner
Journal:  Front Microbiol       Date:  2021-02-10       Impact factor: 5.640

7.  Refining Mitochondrial Intron Classification With ERPIN: Identification Based on Conservation of Sequence Plus Secondary Structure Motifs.

Authors:  Samuel Prince; Carl Munoz; Fannie Filion-Bienvenue; Pierre Rioux; Matt Sarrasin; B Franz Lang
Journal:  Front Microbiol       Date:  2022-03-18       Impact factor: 5.640

8.  Unique and Repeated Stwintrons (Spliceosomal Twin Introns) in the Hypoxylaceae.

Authors:  Erzsébet Fekete; Fruzsina Pénzes; Norbert Ág; Viktória Ág-Rácz; Erzsébet Sándor; Claudio Scazzocchio; Michel Flipphi; Levente Karaffa
Journal:  J Fungi (Basel)       Date:  2022-04-13

9.  The diversity of mtDNA rns introns among strains of Ophiostoma piliferum, Ophiostoma pluriannulatum and related species.

Authors:  Iman M Bilto; Georg Hausner
Journal:  Springerplus       Date:  2016-08-24

10.  Recent and Ongoing Horizontal Transfer of Mitochondrial Introns Between Two Fungal Tree Pathogens.

Authors:  Chase G Mayers; Thomas C Harrington; Alvan Wai; Georg Hausner
Journal:  Front Microbiol       Date:  2021-06-02       Impact factor: 5.640

  10 in total

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