Literature DB >> 20423168

Large-scale simulations of fluctuating biological membranes.

Andrea Pasqua1, Lutz Maibaum, George Oster, Daniel A Fletcher, Phillip L Geissler.   

Abstract

We present a simple, and physically motivated, coarse-grained model of a lipid bilayer, suited for micron scale computer simulations. Each approximately 25 nm(2) patch of bilayer is represented by a spherical particle. Mimicking forces of hydrophobic association, multiparticle interactions suppress the exposure of each sphere's equator to its implicit solvent surroundings. The requirement of high equatorial density stabilizes two-dimensional structures without necessitating crystalline order, allowing us to match both the elasticity and fluidity of natural lipid membranes. We illustrate the model's versatility and realism by characterizing a membrane's response to a prodding nanorod.

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Year:  2010        PMID: 20423168      PMCID: PMC3188600          DOI: 10.1063/1.3382349

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  21 in total

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4.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

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6.  Computer simulations of self-assembled membranes.

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7.  Tunable generic model for fluid bilayer membranes.

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8.  Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales.

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9.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

10.  Membrane-induced bundling of actin filaments.

Authors:  Allen P Liu; David L Richmond; Lutz Maibaum; Sander Pronk; Phillip L Geissler; Daniel A Fletcher
Journal:  Nat Phys       Date:  2008-08-31       Impact factor: 20.034

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  6 in total

1.  Lattice Models for Protein Organization throughout Thylakoid Membrane Stacks.

Authors:  Andreana M Rosnik; Phillip L Geissler
Journal:  Biophys J       Date:  2020-05-01       Impact factor: 4.033

2.  Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics.

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Journal:  Cell Mol Bioeng       Date:  2014-12-01       Impact factor: 2.321

3.  Dielectrophoresis-Mediated Electrodeformation as a Means of Determining Individual Platelet Stiffness.

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4.  Seeing the Forest in Lieu of the Trees: Continuum Simulations of Cell Membranes at Large Length Scales.

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Journal:  Annu Rep Comput Chem       Date:  2014-12-04

5.  Suppressing membrane height fluctuations leads to a membrane-mediated interaction among proteins.

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Journal:  Phys Rev E       Date:  2016-11-29       Impact factor: 2.529

Review 6.  Coarse-grained computer simulation of dynamics in thylakoid membranes: methods and opportunities.

Authors:  Anna R Schneider; Phillip L Geissler
Journal:  Front Plant Sci       Date:  2014-01-21       Impact factor: 5.753

  6 in total

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