Literature DB >> 27967200

Suppressing membrane height fluctuations leads to a membrane-mediated interaction among proteins.

Kayla Sapp1, Lutz Maibaum1.   

Abstract

Membrane-induced interactions can play a significant role in the spatial distribution of membrane-bound proteins. We develop a model that combines a continuum description of lipid bilayers with a discrete particle model of proteins to probe the emerging structure of the combined membrane-protein system. Our model takes into account the membrane's elastic behavior, the steric repulsion between proteins, and the quenching of membrane shape fluctuations due to the presence of the proteins. We employ coupled Langevin equations to describe the dynamics of the system. We show that coupling to the membrane induces an attractive interaction among proteins, which may contribute to the clustering of proteins in biological membranes. We investigate the lateral protein diffusion and find that it is reduced due to transient fluctuations in membrane shape.

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Year:  2016        PMID: 27967200      PMCID: PMC5376292          DOI: 10.1103/PhysRevE.94.052414

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  41 in total

1.  Large-scale simulations of fluctuating biological membranes.

Authors:  Andrea Pasqua; Lutz Maibaum; George Oster; Daniel A Fletcher; Phillip L Geissler
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

2.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

Authors:  Gary S Ayton; Philip D Blood; Gregory A Voth
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

3.  Hybrid simulations of lateral diffusion in fluctuating membranes.

Authors:  Ellen Reister-Gottfried; Stefan M Leitenberger; Udo Seifert
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-01-10

4.  Curvature coupling dependence of membrane protein diffusion coefficients.

Authors:  Stefan M Leitenberger; Ellen Reister-Gottfried; Udo Seifert
Journal:  Langmuir       Date:  2007-12-12       Impact factor: 3.882

5.  The BAR domain superfamily: membrane-molding macromolecules.

Authors:  Adam Frost; Vinzenz M Unger; Pietro De Camilli
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

6.  Effective free energy for pinned membranes.

Authors:  Thomas Speck
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-05-04

7.  Membrane bending by protein-protein crowding.

Authors:  Jeanne C Stachowiak; Eva M Schmid; Christopher J Ryan; Hyoung Sook Ann; Darryl Y Sasaki; Michael B Sherman; Phillip L Geissler; Daniel A Fletcher; Carl C Hayden
Journal:  Nat Cell Biol       Date:  2012-08-19       Impact factor: 28.824

8.  Tunable generic model for fluid bilayer membranes.

Authors:  Ira R Cooke; Kurt Kremer; Markus Deserno
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-07-26

9.  A Hybrid Approach for Highly Coarse-grained Lipid Bilayer Models.

Authors:  Anand Srivastava; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2013-01-08       Impact factor: 6.006

10.  Membrane-induced bundling of actin filaments.

Authors:  Allen P Liu; David L Richmond; Lutz Maibaum; Sander Pronk; Phillip L Geissler; Daniel A Fletcher
Journal:  Nat Phys       Date:  2008-08-31       Impact factor: 20.034

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  3 in total

1.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

2.  An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology.

Authors:  Yiben Fu; Osman N Yogurtcu; Ruchita Kothari; Gudrun Thorkelsdottir; Alexander J Sodt; Margaret E Johnson
Journal:  J Chem Phys       Date:  2019-09-28       Impact factor: 3.488

3.  Simple differences in the protein-membrane attachment mechanism have functional consequences for surface mechanics.

Authors:  K Sapp; L Maibaum; A J Sodt
Journal:  J Chem Phys       Date:  2019-10-28       Impact factor: 3.488

  3 in total

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