Literature DB >> 12496103

Bridging microscopic and mesoscopic simulations of lipid bilayers.

Gary Ayton1, Gregory A Voth.   

Abstract

A lipid bilayer is modeled using a mesoscopic model designed to bridge atomistic bilayer simulations with macro-scale continuum-level simulation. Key material properties obtained from detailed atomistic-level simulations are used to parameterize the meso-scale model. The fundamental length and time scale of the meso-scale simulation are at least an order of magnitude beyond that used at the atomistic level. Dissipative particle dynamics cast in a new membrane formulation provides the simulation methodology. A meso-scale representation of a dimyristoylphosphatidylcholine membrane is examined in the high and low surface tension regimes. At high surface tensions, the calculated modulus is found to be slightly less than the atomistically determined value. This result agrees with the theoretical prediction that high-strain thermal undulations still persist, which have the effect of reducing the value of the atomistically determined modulus. Zero surface tension simulations indicate the presence of strong thermal undulatory modes, whereas the undulation spectrum and the calculated bending modulus are in excellent agreement with theoretical predictions and experiment.

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Year:  2002        PMID: 12496103      PMCID: PMC1302411          DOI: 10.1016/S0006-3495(02)75336-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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Authors:  Gary Ayton; Alexander M Smondyrev; Scott G Bardenhagen; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Entropy-driven tension and bending elasticity in condensed-fluid membranes.

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5.  Canonical dynamics: Equilibrium phase-space distributions.

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6.  Hydrodynamics from dissipative particle dynamics.

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Review 7.  A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems.

Authors:  D P Tieleman; S J Marrink; H J Berendsen
Journal:  Biochim Biophys Acta       Date:  1997-11-21

8.  Mechanical properties of vesicles. II. A model for osmotic swelling and lysis.

Authors:  F R Hallett; J Marsh; B G Nickel; J M Wood
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9.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
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10.  Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations.

Authors:  E Lindahl; O Edholm
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

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  26 in total

1.  Dynamics of pinned membranes with application to protein diffusion on the surface of red blood cells.

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Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

2.  Mesoscopic lateral diffusion in lipid bilayers.

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Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

3.  Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers.

Authors:  J Liam McWhirter; Gary Ayton; Gregory A Voth
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Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

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Review 6.  Implicit solvent simulation models for biomembranes.

Authors:  Grace Brannigan; Lawrence C-L Lin; Frank L H Brown
Journal:  Eur Biophys J       Date:  2005-09-27       Impact factor: 1.733

7.  Coupling field theory with continuum mechanics: a simulation of domain formation in giant unilamellar vesicles.

Authors:  Gary S Ayton; J Liam McWhirter; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

8.  Multi-scale modeling of phase separation in mixed lipid bilayers.

Authors:  Qiang Shi; Gregory A Voth
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

9.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

Authors:  Gary S Ayton; Philip D Blood; Gregory A Voth
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

10.  Concentration effects of volatile anesthetics on the properties of model membranes: a coarse-grain approach.

Authors:  Mónica Pickholz; Leonor Saiz; Michael L Klein
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

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