Literature DB >> 25530818

Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics.

Peng Zhang1, Chao Gao1, Na Zhang2, Marvin J Slepian3, Yuefan Deng2, Danny Bluestein1.   

Abstract

We developed a multiscale particle-based model of platelets, to study the transport dynamics of shear stresses between the surrounding fluid and the platelet membrane. This model facilitates a more accurate prediction of the activation potential of platelets by viscous shear stresses - one of the major mechanisms leading to thrombus formation in cardiovascular diseases and in prosthetic cardiovascular devices. The interface of the model couples coarse-grained molecular dynamics (CGMD) with dissipative particle dynamics (DPD). The CGMD handles individual platelets while the DPD models the macroscopic transport of blood plasma in vessels. A hybrid force field is formulated for establishing a functional interface between the platelet membrane and the surrounding fluid, in which the microstructural changes of platelets may respond to the extracellular viscous shear stresses transferred to them. The interaction between the two systems preserves dynamic properties of the flowing platelets, such as the flipping motion. Using this multiscale particle-based approach, we have further studied the effects of the platelet elastic modulus by comparing the action of the flow-induced shear stresses on rigid and deformable platelet models. The results indicate that neglecting the platelet deformability may overestimate the stress on the platelet membrane, which in turn may lead to erroneous predictions of the platelet activation under viscous shear flow conditions. This particle-based fluid-structure interaction multiscale model offers for the first time a computationally feasible approach for simulating deformable platelets interacting with viscous blood flow, aimed at predicting flow induced platelet activation by using a highly resolved mapping of the stress distribution on the platelet membrane under dynamic flow conditions.

Entities:  

Keywords:  Multiscale simulations; dissipative particle dynamics; molecular dynamics; platelets

Year:  2014        PMID: 25530818      PMCID: PMC4267858          DOI: 10.1007/s12195-014-0356-5

Source DB:  PubMed          Journal:  Cell Mol Bioeng        ISSN: 1865-5025            Impact factor:   2.321


  47 in total

1.  Effects of contact-induced membrane stiffening on platelet adhesion.

Authors:  E J-P Martinez; Y Lanir; S Einav
Journal:  Biomech Model Mechanobiol       Date:  2003-12-19

2.  Large-scale simulations of fluctuating biological membranes.

Authors:  Andrea Pasqua; Lutz Maibaum; George Oster; Daniel A Fletcher; Phillip L Geissler
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

3.  A multiscale red blood cell model with accurate mechanics, rheology, and dynamics.

Authors:  Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

4.  Design optimization of a mechanical heart valve for reducing valve thrombogenicity-A case study with ATS valve.

Authors:  Yared Alemu; Gaurav Girdhar; Michalis Xenos; Jawaad Sheriff; Jolyon Jesty; Shmuel Einav; Danny Bluestein
Journal:  ASAIO J       Date:  2010 Sep-Oct       Impact factor: 2.872

5.  Interactions of blood cell constituents: experimental investigation and computational modeling by discrete particle dynamics algorithm.

Authors:  N Filipovic; D Ravnic; M Kojic; S J Mentzer; S Haber; A Tsuda
Journal:  Microvasc Res       Date:  2007-10-12       Impact factor: 3.514

Review 6.  Biomolecular simulation: a computational microscope for molecular biology.

Authors:  Ron O Dror; Robert M Dirks; J P Grossman; Huafeng Xu; David E Shaw
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

Review 7.  Systematic coarse-graining of the dynamics of entangled polymer melts: the road from chemistry to rheology.

Authors:  J T Padding; W J Briels
Journal:  J Phys Condens Matter       Date:  2011-05-25       Impact factor: 2.333

8.  Computational biorheology of human blood flow in health and disease.

Authors:  Dmitry A Fedosov; Ming Dao; George Em Karniadakis; Subra Suresh
Journal:  Ann Biomed Eng       Date:  2013-10-12       Impact factor: 3.934

9.  Mechanics of transient platelet adhesion to von Willebrand factor under flow.

Authors:  Nipa A Mody; Oleg Lomakin; Teresa A Doggett; Thomas G Diacovo; Michael R King
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

10.  Evaluation of shear-induced platelet activation models under constant and dynamic shear stress loading conditions relevant to devices.

Authors:  Jawaad Sheriff; João Silva Soares; Michalis Xenos; Jolyon Jesty; Marvin J Slepian; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2013-02-12       Impact factor: 3.934

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  22 in total

1.  A Multiple Time Stepping Algorithm for Efficient Multiscale Modeling of Platelets Flowing in Blood Plasma.

Authors:  Peng Zhang; Na Zhang; Yuefan Deng; Danny Bluestein
Journal:  J Comput Phys       Date:  2015-03-01       Impact factor: 3.553

2.  A multiscale biomechanical model of platelets: Correlating with in-vitro results.

Authors:  Peng Zhang; Li Zhang; Marvin J Slepian; Yuefan Deng; Danny Bluestein
Journal:  J Biomech       Date:  2016-11-11       Impact factor: 2.712

3.  A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber.

Authors:  Jordi Pallarès; Oriol Senan; Roger Guimerà; Anton Vernet; Antoni Aguilar-Mogas; Gemma Vilahur; Lina Badimon; Marta Sales-Pardo; Salvatore Cito
Journal:  Sci Rep       Date:  2015-09-22       Impact factor: 4.379

4.  Dielectrophoresis-Mediated Electrodeformation as a Means of Determining Individual Platelet Stiffness.

Authors:  Siu Ling Leung; Yi Lu; Danny Bluestein; Marvin J Slepian
Journal:  Ann Biomed Eng       Date:  2015-07-23       Impact factor: 3.934

5.  Scalability Test of Multiscale Fluid-Platelet Model for Three Top Supercomputers.

Authors:  Peng Zhang; Na Zhang; Chao Gao; Li Zhang; Yuxiang Gao; Yuefan Deng; Danny Bluestein
Journal:  Comput Phys Commun       Date:  2016-04-08       Impact factor: 4.390

6.  Lagrangian methods for blood damage estimation in cardiovascular devices--How numerical implementation affects the results.

Authors:  Gil Marom; Danny Bluestein
Journal:  Expert Rev Med Devices       Date:  2016-01-11       Impact factor: 3.166

7.  In Vitro Measurements of Shear-Mediated Platelet Adhesion Kinematics as Analyzed through Machine Learning.

Authors:  Jawaad Sheriff; Peineng Wang; Peng Zhang; Ziji Zhang; Yuefan Deng; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2021-05-10       Impact factor: 3.934

8.  A predictive multiscale model for simulating flow-induced platelet activation: Correlating in silico results with in vitro results.

Authors:  Peng Zhang; Jawaad Sheriff; Shmuel Einav; Marvin J Slepian; Yuefan Deng; Danny Bluestein
Journal:  J Biomech       Date:  2021-01-25       Impact factor: 2.712

9.  A Multiscale Model for Recruitment Aggregation of Platelets by Correlating with In Vitro Results.

Authors:  Prachi Gupta; Peng Zhang; Jawaad Sheriff; Danny Bluestein; Yuefan Deng
Journal:  Cell Mol Bioeng       Date:  2019-07-09       Impact factor: 2.321

10.  Rapid analysis of streaming platelet images by semi-unsupervised learning.

Authors:  Ziji Zhang; Peng Zhang; Peineng Wang; Jawaad Sheriff; Danny Bluestein; Yuefan Deng
Journal:  Comput Med Imaging Graph       Date:  2021-03-11       Impact factor: 4.790

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