Literature DB >> 16375498

Solvent-free model for self-assembling fluid bilayer membranes: stabilization of the fluid phase based on broad attractive tail potentials.

Ira R Cooke1, Markus Deserno.   

Abstract

We present a simple and highly adaptable method for simulating coarse-grained lipid membranes without explicit solvent. Lipids are represented by one head bead and two tail beads, with the interaction between tails being of key importance in stabilizing the fluid phase. Two such tail-tail potentials were tested, with the important feature in both cases being a variable range of attraction. We examined phase diagrams of this range versus temperature for both functional forms of the tail-tail attraction and found that a certain threshold attractive width was required to stabilize the fluid phase. Within the fluid-phase region we find that material properties such as area per lipid, orientational order, diffusion constant, interleaflet flip-flop rate, and bilayer stiffness all depend strongly and monotonically on the attractive width. For three particular values of the potential width we investigate the transition between gel and fluid phases via heating or cooling and find that this transition is discontinuous with considerable hysteresis. We also investigated the stretching of a bilayer to eventually form a pore and found excellent agreement with recent analytic theory.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16375498     DOI: 10.1063/1.2135785

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  40 in total

1.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Large-scale simulations of fluctuating biological membranes.

Authors:  Andrea Pasqua; Lutz Maibaum; George Oster; Daniel A Fletcher; Phillip L Geissler
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

3.  An implicit solvent coarse-grained lipid model with correct stress profile.

Authors:  Alex J Sodt; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

4.  Coarse-grained simulation studies of peptide-induced pore formation.

Authors:  Gregoria Illya; Markus Deserno
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

5.  Investigations on the melting and bending modulus of polymer grafted bilayers using dissipative particle dynamics.

Authors:  Foram M Thakkar; K G Ayappa
Journal:  Biomicrofluidics       Date:  2010-09-30       Impact factor: 2.800

6.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

7.  Simulations show that virus assembly and budding are facilitated by membrane microdomains.

Authors:  Teresa Ruiz-Herrero; Michael F Hagan
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

8.  Coarse-Grained Modeling of Pore Dynamics on the Red Blood Cell Membrane under Large Deformations.

Authors:  Meghdad Razizadeh; Mehdi Nikfar; Ratul Paul; Yaling Liu
Journal:  Biophys J       Date:  2020-06-24       Impact factor: 4.033

9.  A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations.

Authors:  Zun-Jing Wang; Markus Deserno
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

10.  Hybrid coarse-graining approach for lipid bilayers at large length and time scales.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.