Literature DB >> 16089969

Tunable generic model for fluid bilayer membranes.

Ira R Cooke1, Kurt Kremer, Markus Deserno.   

Abstract

We present a model for the efficient simulation of generic bilayer membranes. Individual lipids are represented by one head bead and two tail beads. By means of simple pair potentials these robustly self-assemble to a fluid bilayer state over a wide range of parameters, without the need for an explicit solvent. The model shows the expected elastic behavior on large length scales, and its physical properties (e.g., fluidity or bending stiffness) can be widely tuned via a single parameter. In particular, bending rigidities in the experimentally relevant range are obtained, at least within 3-30 k(B) T. The model is naturally suited to study many physical topics, including self-assembly, fusion, bilayer melting, lipid mixtures, rafts, and protein-bilayer interactions.

Entities:  

Year:  2005        PMID: 16089969     DOI: 10.1103/PhysRevE.72.011506

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  66 in total

1.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Large-scale simulations of fluctuating biological membranes.

Authors:  Andrea Pasqua; Lutz Maibaum; George Oster; Daniel A Fletcher; Phillip L Geissler
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

3.  An implicit solvent coarse-grained lipid model with correct stress profile.

Authors:  Alex J Sodt; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

4.  Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes.

Authors:  Brian A Camley; Michael G Lerner; Richard W Pastor; Frank L H Brown
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

5.  Partial wrapping and spontaneous endocytosis of spherical nanoparticles by tensionless lipid membranes.

Authors:  Eric J Spangler; Sudhir Upreti; Mohamed Laradji
Journal:  J Chem Phys       Date:  2016-01-28       Impact factor: 3.488

Review 6.  Implicit solvent simulation models for biomembranes.

Authors:  Grace Brannigan; Lawrence C-L Lin; Frank L H Brown
Journal:  Eur Biophys J       Date:  2005-09-27       Impact factor: 1.733

7.  A consistent model for thermal fluctuations and protein-induced deformations in lipid bilayers.

Authors:  Grace Brannigan; Frank L H Brown
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

8.  Size-dependent diffusion of membrane inclusions.

Authors:  Gernot Guigas; Matthias Weiss
Journal:  Biophys J       Date:  2006-07-07       Impact factor: 4.033

9.  Coarse-grained simulation studies of peptide-induced pore formation.

Authors:  Gregoria Illya; Markus Deserno
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

10.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

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