Literature DB >> 16605358

Meshless membrane model based on the moving least-squares method.

Hiroshi Noguchi1, Gerhard Gompper.   

Abstract

A meshless particle-based membrane model is proposed. The particles possess no internal degree of freedom and interact via a potential, which has three different contributions: a short-range repulsive pair potential, an attractive multibody potential, and a curvature potential based on the moving least-squares method. Brownian dynamics simulations are employed to demonstrate that the particles self-assemble into a membrane and to study equilibrium properties, such as bending rigidity, surface tension, line tension, and diffusion constant. The bending rigidity and line tension are shown to depend on different potential parameters and can therefore be varied independently. The finite-size effects of nearly planar membranes are investigated. This model is well suited to study the membrane dynamics with topological changes.

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Year:  2006        PMID: 16605358     DOI: 10.1103/PhysRevE.73.021903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  16 in total

1.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Large-scale simulations of fluctuating biological membranes.

Authors:  Andrea Pasqua; Lutz Maibaum; George Oster; Daniel A Fletcher; Phillip L Geissler
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

3.  Modeling the flow of dense suspensions of deformable particles in three dimensions.

Authors:  Michael M Dupin; Ian Halliday; Chris M Care; Lyuba Alboul; Lance L Munn
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-27

4.  Spatially resolved simulations of membrane reactions and dynamics: multipolar reaction DPD.

Authors:  R M Füchslin; T Maeke; J S McCaskill
Journal:  Eur Phys J E Soft Matter       Date:  2009-08-21       Impact factor: 1.890

5.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

Review 6.  Understanding biochemical processes in the presence of sub-diffusive behavior of biomolecules in solution and living cells.

Authors:  Sujit Basak; Sombuddha Sengupta; Krishnananda Chattopadhyay
Journal:  Biophys Rev       Date:  2019-08-23

7.  Dynamics of a multicomponent vesicle in shear flow.

Authors:  Kai Liu; Gary R Marple; Jun Allard; Shuwang Li; Shravan Veerapaneni; John Lowengrub
Journal:  Soft Matter       Date:  2017-04-25       Impact factor: 3.679

8.  Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

9.  Construction of Nuclear Envelope Shape by a High-Genus Vesicle with Pore-Size Constraint.

Authors:  Hiroshi Noguchi
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

Review 10.  Physical Principles of Nanoparticle Cellular Endocytosis.

Authors:  Sulin Zhang; Huajian Gao; Gang Bao
Journal:  ACS Nano       Date:  2015-08-21       Impact factor: 15.881

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