Literature DB >> 20308094

The population genetics of beneficial mutations.

H Allen Orr1.   

Abstract

The population genetic study of advantageous mutations has lagged behind that of deleterious and neutral mutations. But over the past two decades, a number of significant developments, both theoretical and empirical, have occurred. Here, I review two of these developments: the attempt to determine the distribution of fitness effects among beneficial mutations and the attempt to determine their average dominance. Considering both theory and data, I conclude that, while considerable theoretical progress has been made, we still lack sufficient data to draw confident conclusions about the distribution of effects or the dominance of beneficial mutations.

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Year:  2010        PMID: 20308094      PMCID: PMC2871816          DOI: 10.1098/rstb.2009.0282

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  36 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Haldane's sieve and adaptation from the standing genetic variation.

Authors:  H A Orr; A J Betancourt
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

3.  The distribution of fitness effects among beneficial mutations.

Authors:  H Allen Orr
Journal:  Genetics       Date:  2003-04       Impact factor: 4.562

4.  An evolutionary advantage of haploidy in large yeast populations.

Authors:  Clifford Zeyl; Thomas Vanderford; Michele Carter
Journal:  Science       Date:  2003-01-24       Impact factor: 47.728

5.  The population genetics of adaptation: the adaptation of DNA sequences.

Authors:  H Allen Orr
Journal:  Evolution       Date:  2002-07       Impact factor: 3.694

6.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

7.  A test for faster X evolution in Drosophila.

Authors:  Andrea J Betancourt; Daven C Presgraves; Willie J Swanson
Journal:  Mol Biol Evol       Date:  2002-10       Impact factor: 16.240

8.  The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus.

Authors:  Rafael Sanjuán; Andrés Moya; Santiago F Elena
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

Review 9.  The genetic theory of adaptation: a brief history.

Authors:  H Allen Orr
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

10.  Using comparative genomic data to test for fast-X evolution.

Authors:  Brian A Counterman; Daniel Ortíz-Barrientos; Mohamed A F Noor
Journal:  Evolution       Date:  2004-03       Impact factor: 3.694

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  53 in total

1.  Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution.

Authors:  Tim Connallon; Nadia D Singh; Andrew G Clark
Journal:  Mol Biol Evol       Date:  2012-02-02       Impact factor: 16.240

2.  A test for selection employing quantitative trait locus and mutation accumulation data.

Authors:  Daniel P Rice; Jeffrey P Townsend
Journal:  Genetics       Date:  2012-01-31       Impact factor: 4.562

3.  Establishment of new mutations in changing environments.

Authors:  Stephan Peischl; Mark Kirkpatrick
Journal:  Genetics       Date:  2012-04-27       Impact factor: 4.562

4.  The nearly neutral and selection theories of molecular evolution under the fisher geometrical framework: substitution rate, population size, and complexity.

Authors:  Pablo Razeto-Barry; Javier Díaz; Rodrigo A Vásquez
Journal:  Genetics       Date:  2012-03-16       Impact factor: 4.562

Review 5.  Measurements of spontaneous rates of mutations in the recent past and the near future.

Authors:  Fyodor A Kondrashov; Alexey S Kondrashov
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

Review 6.  Beneficial mutations and the dynamics of adaptation in asexual populations.

Authors:  Paul D Sniegowski; Philip J Gerrish
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

7.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

8.  Extensive X-linked adaptive evolution in central chimpanzees.

Authors:  Christina Hvilsom; Yu Qian; Thomas Bataillon; Yingrui Li; Thomas Mailund; Bettina Sallé; Frands Carlsen; Ruiqiang Li; Hancheng Zheng; Tao Jiang; Hui Jiang; Xin Jin; Kasper Munch; Asger Hobolth; Hans R Siegismund; Jun Wang; Mikkel Heide Schierup
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

9.  Genetic variation and co-variation for fitness between intra-population and inter-population backgrounds in the red flour beetle, Tribolium castaneum.

Authors:  D W Drury; M J Wade
Journal:  J Evol Biol       Date:  2010-11-02       Impact factor: 2.411

10.  Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships.

Authors:  Christopher M Jakobson; Daniel F Jarosz
Journal:  Cell Syst       Date:  2019-05-01       Impact factor: 10.304

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