Literature DB >> 20221839

Quantum mechanical origin of the conformational preferences of 4-thiaproline and its S-oxides.

Amit Choudhary1, Khian Hong Pua, Ronald T Raines.   

Abstract

The saturated ring and secondary amine of proline spawn equilibria between pyrrolidine ring puckers as well as peptide bond isomers. These conformational equilibria can be modulated by alterations to the chemical architecture of proline. For example, C(γ) in the pyrrolidine ring can be replaced with sulfur, which can be oxidized either stereoselectively to yield diastereomeric S-oxides or completely to yield a sulfone. Here, the thiazolidine ring and peptide bond conformations of 4-thiaproline and its S-oxides were analyzed in an Ac-Xaa-OMe system using NMR spectroscopy, X-ray crystallography, and hybrid density functional theory. The results indicate that the ring pucker of the S-oxides is governed by the gauche effect, and the prolyl peptide bond conformation is determined by the strength of the n → π* interaction between the amide oxygen and the ester carbonyl group. These findings, which are consistent with those of isologous 4-hydroxyprolines and 4-fluoroprolines, substantiate the importance of electron delocalization in amino acid conformation.

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Year:  2010        PMID: 20221839      PMCID: PMC2910815          DOI: 10.1007/s00726-010-0504-8

Source DB:  PubMed          Journal:  Amino Acids        ISSN: 0939-4451            Impact factor:   3.520


  23 in total

1.  Orthogonal dipolar interactions between amide carbonyl groups.

Authors:  Felix R Fischer; Peter A Wood; Frank H Allen; François Diederich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-03       Impact factor: 11.205

2.  Effects of proline analog binding on the spectroscopic and redox properties of PutA.

Authors:  Weidong Zhu; Yekaterina Gincherman; Paul Docherty; Christopher D Spilling; Donald F Becker
Journal:  Arch Biochem Biophys       Date:  2002-12-01       Impact factor: 4.013

3.  Variations in the turn-forming characteristics of N-acyl proline units.

Authors:  G B Liang; C J Rito; S H Gellman
Journal:  Biopolymers       Date:  1992-03       Impact factor: 2.505

4.  Conformational aspects of polypeptide structure. 32. Helical poly[(S)-thiazolidine-4-carboxylic acid]. Experimental results.

Authors:  M Goodman; K Su; G C Niu
Journal:  J Am Chem Soc       Date:  1970-08-26       Impact factor: 15.419

Review 5.  Prolyl 4-hydroxylase.

Authors:  Kelly L Gorres; Ronald T Raines
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-04       Impact factor: 8.250

6.  Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.

Authors:  Michele L DeRider; Steven J Wilkens; Michael J Waddell; Lynn E Bretscher; Frank Weinhold; Ronald T Raines; John L Markley
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

7.  Conformational aspects of polypeptide structure. 31. Helical poly[(S)-thiazolidine-4-carboxylic acid] and poly[(S)-oxazolidine-4-carboxylic acid]. Theoretical results.

Authors:  M Goodman; G C Niu; K Su
Journal:  J Am Chem Soc       Date:  1970-08-26       Impact factor: 15.419

8.  Origin of the stability conferred upon collagen by fluorination.

Authors:  Matthew D Shoulders; Kimberli J Kamer; Ronald T Raines
Journal:  Bioorg Med Chem Lett       Date:  2009-04-21       Impact factor: 2.823

9.  Pyrrolidine ring puckering in cis and trans-proline residues in proteins and polypeptides. Different puckers are favoured in certain situations.

Authors:  E J Milner-White; L H Bell; P H Maccallum
Journal:  J Mol Biol       Date:  1992-12-05       Impact factor: 5.469

10.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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  12 in total

Review 1.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

2.  Signatures of n→π* interactions in proteins.

Authors:  Robert W Newberry; Gail J Bartlett; Brett VanVeller; Derek N Woolfson; Ronald T Raines
Journal:  Protein Sci       Date:  2014-03       Impact factor: 6.725

3.  Evaluating electronic structure methods for accurate calculation of 19 F chemical shifts in fluorinated amino acids.

Authors:  Jayangika N Dahanayake; Chandana Kasireddy; Jonathan M Ellis; Derek Hildebrandt; Olivia A Hull; Joseph P Karnes; Dylan Morlan; Katie R Mitchell-Koch
Journal:  J Comput Chem       Date:  2017-08-21       Impact factor: 3.376

4.  Intimate interactions with carbonyl groups: dipole-dipole or n→π*?

Authors:  Kimberli J Kamer; Amit Choudhary; Ronald T Raines
Journal:  J Org Chem       Date:  2012-12-10       Impact factor: 4.354

5.  An n→π* interaction in aspirin: implications for structure and reactivity.

Authors:  Amit Choudhary; Kimberli J Kamer; Ronald T Raines
Journal:  J Org Chem       Date:  2011-09-06       Impact factor: 4.354

6.  A key n→π* Interaction in N-acyl homoserine lactones.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2014-02-26       Impact factor: 5.100

7.  n→π* interactions in poly(lactic acid) suggest a role in protein folding.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2013-09-11       Impact factor: 6.222

8.  Sulfur- and seleno-containing amino acids.

Authors:  Maria Wróbel; Martha H Stipanuk; Noriuki Nagahara
Journal:  Amino Acids       Date:  2011-06       Impact factor: 3.520

9.  n→π* interactions engender chirality in carbonyl groups.

Authors:  Amit Choudhary; Robert W Newberry; Ronald T Raines
Journal:  Org Lett       Date:  2014-06-13       Impact factor: 6.005

10.  n→π* interactions of amides and thioamides: implications for protein stability.

Authors:  Robert W Newberry; Brett VanVeller; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2013-05-20       Impact factor: 15.419

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