Literature DB >> 12485611

Effects of proline analog binding on the spectroscopic and redox properties of PutA.

Weidong Zhu1, Yekaterina Gincherman, Paul Docherty, Christopher D Spilling, Donald F Becker.   

Abstract

The PutA flavoprotein regulates proline metabolism in Escherichia coli by performing two distinct functions. First, in the cytoplasm, PutA represses transcription of the put (proline utilization) regulon. Second, PutA associates with the membrane to oxidize proline to glutamate using discrete proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase domains. Here, we identify a proline analog that will be useful for testing the role substrate binding has in regulating PutA functions. L-Tetrahydro-2-furoic acid (L-THFA) was found to display simple competitive inhibition of proline dehydrogenase activity in PutA (apparent K(i)=0.2mM) and to perturb the flavin adenine dinucleotide (FAD) absorbance spectrum upon complexation to PutA. At pH 7.5, a reduction potential (E(m)) of -0.089V for the FAD/FADH(2) couple in L-THFA-complexed PutA was determined by potentiometric titrations. The E(m) value for L-THFA-complexed PutA is 12mV more negative than the E(m) for uncomplexed PutA (E(m)=-0.077V, pH 7.5) and corresponds to just a twofold increase in the dissociation constant of L-THFA with PutA upon reduction of FAD.

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Year:  2002        PMID: 12485611     DOI: 10.1016/s0003-9861(02)00535-0

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  30 in total

1.  Purification and characterization of Put1p from Saccharomyces cerevisiae.

Authors:  Srimevan Wanduragala; Nikhilesh Sanyal; Xinwen Liang; Donald F Becker
Journal:  Arch Biochem Biophys       Date:  2010-05-05       Impact factor: 4.013

2.  Rapid reaction kinetics of proline dehydrogenase in the multifunctional proline utilization A protein.

Authors:  Michael A Moxley; Donald F Becker
Journal:  Biochemistry       Date:  2011-12-15       Impact factor: 3.162

3.  Identification and characterization of the DNA-binding domain of the multifunctional PutA flavoenzyme.

Authors:  Dan Gu; Yuzhen Zhou; Verena Kallhoff; Berevan Baban; John J Tanner; Donald F Becker
Journal:  J Biol Chem       Date:  2004-05-20       Impact factor: 5.157

4.  Small-angle X-ray scattering studies of the oligomeric state and quaternary structure of the trifunctional proline utilization A (PutA) flavoprotein from Escherichia coli.

Authors:  Ranjan K Singh; John D Larson; Weidong Zhu; Robert P Rambo; Greg L Hura; Donald F Becker; John J Tanner
Journal:  J Biol Chem       Date:  2011-10-19       Impact factor: 5.157

5.  Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.

Authors:  David A Korasick; Harkewal Singh; Travis A Pemberton; Min Luo; Richa Dhatwalia; John J Tanner
Journal:  FEBS J       Date:  2017-08-01       Impact factor: 5.542

6.  Characterization of a bifunctional PutA homologue from Bradyrhizobium japonicum and identification of an active site residue that modulates proline reduction of the flavin adenine dinucleotide cofactor.

Authors:  Navasona Krishnan; Donald F Becker
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

Review 7.  Structural biology of proline catabolism.

Authors:  John J Tanner
Journal:  Amino Acids       Date:  2008-03-28       Impact factor: 3.520

8.  Structure and characterization of a class 3B proline utilization A: Ligand-induced dimerization and importance of the C-terminal domain for catalysis.

Authors:  David A Korasick; Thameesha T Gamage; Shelbi Christgen; Kyle M Stiers; Lesa J Beamer; Michael T Henzl; Donald F Becker; John J Tanner
Journal:  J Biol Chem       Date:  2017-04-18       Impact factor: 5.157

9.  Evidence for Pipecolate Oxidase in Mediating Protection Against Hydrogen Peroxide Stress.

Authors:  Sathish Kumar Natarajan; Ezhumalai Muthukrishnan; Oleh Khalimonchuk; Justin L Mott; Donald F Becker
Journal:  J Cell Biochem       Date:  2016-12-13       Impact factor: 4.429

10.  Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors.

Authors:  Min Zhang; Tommi A White; Jonathan P Schuermann; Berevan A Baban; Donald F Becker; John J Tanner
Journal:  Biochemistry       Date:  2004-10-05       Impact factor: 3.162

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