Literature DB >> 19423349

Origin of the stability conferred upon collagen by fluorination.

Matthew D Shoulders1, Kimberli J Kamer, Ronald T Raines.   

Abstract

According to a prevailing theory, (2S,4R)-4-hydroxyproline (Hyp) residues stabilize the collagen triple helix via a stereoelectronic effect that preorganizes appropriate backbone torsion angles for triple-helix formation. This theory is consistent with the marked stability that results from replacing the hydroxyl group with the more electron-withdrawing fluoro group, as in (2S,4R)-4-fluoroproline (Flp). Nonetheless, the hyperstability of triple helices containing Flp has been attributed by others to the hydrophobic effect rather than a stereoelectronic effect. We tested this hypothesis by replacing Hyp with 4,4-difluoroproline (Dfp) in collagen-related peptides. Dfp retains the hydrophobicity of Flp, but lacks the ability of Flp to preorganize backbone torsion angles. Unlike Flp, Dfp does not endow triple helices with elevated stability, indicating that the hyperstability conferred by Flp is not due to the hydrophobic effect.

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Year:  2009        PMID: 19423349      PMCID: PMC2709698          DOI: 10.1016/j.bmcl.2009.03.168

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  31 in total

1.  Fluoroprolines as Tools for Protein Design and Engineering We thank Mrs. E. Weyher for skillful technical assistance in spectroscopic analyses and Mrs. W. Wenger for her excellent technical assistance in protein preparation. We are indebted to Dr. R. Golbik for providing us with barstar plasmid and protocols for its isolation and purification.

Authors:  Christian Renner; Stefan Alefelder; Jae H. Bae; Nediljko Budisa; Robert Huber; Luis Moroder
Journal:  Angew Chem Int Ed Engl       Date:  2001-03-02       Impact factor: 15.336

2.  Conformational stability of collagen relies on a stereoelectronic effect.

Authors:  L E Bretscher; C L Jenkins; K M Taylor; M L DeRider; R T Raines
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

3.  Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability This work was supported by a grant from the U.S. Army Research Office. Y. Tang is supported by a Whitaker Graduate Research Fellowship. We thank Dr. Gary Hathaway for performing matrix-assisted laser desorption/ionization analyses.

Authors:  Yi Tang; Giovanna Ghirlanda; Wendy A. Petka; Tadashi Nakajima; William F. DeGrado; David A. Tirrell
Journal:  Angew Chem Int Ed Engl       Date:  2001-04-17       Impact factor: 15.336

4.  Collagen-based structures containing the peptoid residue N-isobutylglycine (Nleu): synthesis and biophysical studies of Gly-Nleu-Pro sequences by circular dichroism and optical rotation.

Authors:  Y Feng; G Melacini; M Goodman
Journal:  Biochemistry       Date:  1997-07-22       Impact factor: 3.162

Review 5.  Fluorinated amino acids in protein design and engineering.

Authors:  Nicholas C Yoder; Krishna Kumar
Journal:  Chem Soc Rev       Date:  2002-11       Impact factor: 54.564

6.  Analysis of structural design features in collagen.

Authors:  E Y Jones; A Miller
Journal:  J Mol Biol       Date:  1991-03-05       Impact factor: 5.469

7.  Loss of assembly of the main basement membrane collagen, type IV, but not fibril-forming collagens and embryonic death in collagen prolyl 4-hydroxylase I null mice.

Authors:  Tiina Holster; Outi Pakkanen; Raija Soininen; Raija Sormunen; Minna Nokelainen; Kari I Kivirikko; Johanna Myllyharju
Journal:  J Biol Chem       Date:  2006-11-29       Impact factor: 5.157

8.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

9.  Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.

Authors:  Michele L DeRider; Steven J Wilkens; Michael J Waddell; Lynn E Bretscher; Frank Weinhold; Ronald T Raines; John L Markley
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

Review 10.  Collagen structure and stability.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

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  17 in total

1.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

2.  Interstrand dipole-dipole interactions can stabilize the collagen triple helix.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  J Biol Chem       Date:  2011-04-10       Impact factor: 5.157

3.  The aberrance of the 4S diastereomer of 4-hydroxyproline.

Authors:  Matthew D Shoulders; Frank W Kotch; Amit Choudhary; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

4.  4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Top Heterocycl Chem       Date:  2016-01-12

5.  Synthesis of 5-fluoro- and 5-hydroxymethanoprolines via lithiation of N-BOC-methanopyrrolidines. Constrained Cγ-exo and Cγ-endo Flp and Hyp conformer mimics.

Authors:  Grant R Krow; Matthew D Shoulders; Ramakrishna Edupuganti; Deepa Gandla; Fang Yu; Philip E Sonnet; Matthew Sender; Amit Choudhary; Charles DeBrosse; Charles W Ross; Patrick Carroll; Ronald T Raines
Journal:  J Org Chem       Date:  2012-05-25       Impact factor: 4.354

Review 6.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

7.  Quantum mechanical origin of the conformational preferences of 4-thiaproline and its S-oxides.

Authors:  Amit Choudhary; Khian Hong Pua; Ronald T Raines
Journal:  Amino Acids       Date:  2010-03-12       Impact factor: 3.520

8.  Proline editing: a general and practical approach to the synthesis of functionally and structurally diverse peptides. Analysis of steric versus stereoelectronic effects of 4-substituted prolines on conformation within peptides.

Authors:  Anil K Pandey; Devan Naduthambi; Krista M Thomas; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2013-03-11       Impact factor: 15.419

9.  An insight into the biophysical characterization of insoluble collagen aggregates: implication for arthritis.

Authors:  Samreen Amani; Anas Shamsi; Gulam Rabbani; Aabgeena Naim
Journal:  J Fluoresc       Date:  2014-07-11       Impact factor: 2.217

10.  Both the cis-trans equilibrium and isomerization dynamics of a single proline amide modulate β2-microglobulin amyloid assembly.

Authors:  Vladimir Yu Torbeev; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-21       Impact factor: 11.205

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