| Literature DB >> 28833293 |
Jayangika N Dahanayake1, Chandana Kasireddy1, Jonathan M Ellis1, Derek Hildebrandt1, Olivia A Hull1, Joseph P Karnes1, Dylan Morlan1, Katie R Mitchell-Koch1.
Abstract
The ability of electronic structure methods (11 density functionals, HF, and MP2 calculations; two basis sets and two solvation models) to accurately calculate the 19 F chemical shifts of 31 structures of fluorinated amino acids and analogues with known experimental 19 F NMR spectra has been evaluated. For this task, BHandHLYP, ωB97X, and Hartree-Fock with scaling factors (provided within) are most accurate. Additionally, the accuracy of methods to calculate relative changes in fluorine shielding across 23 sets of structural variants, such as zwitterionic amino acids versus side chains only, was also determined. This latter criterion may be a better indicator of reliable methods for the ultimate goal of assigning and interpreting chemical shifts of fluorinated amino acids in proteins. It was found that MP2 and M062X calculations most accurately assess changes in shielding among analogues. These results serve as a guide for computational developments to calculate 19 F chemical shifts in biomolecular environments.Entities:
Keywords: DFT; chemical shifts; density functional; fluorinated amino acids; fluorine NMR; fluorolabeling; scaling factors; shielding
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Year: 2017 PMID: 28833293 PMCID: PMC5638705 DOI: 10.1002/jcc.24919
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376