Literature DB >> 20126801

Higher resolution in localization microscopy by slower switching of a photochromic protein.

Hideaki Mizuno1, Peter Dedecker, Ryoko Ando, Takashi Fukano, Johan Hofkens, Atsushi Miyawaki.   

Abstract

Photoswitchable fluorophores play an essential role in super-resolution fluorescence microscopy, including techniques such as photoactivated localization microscopy (PALM). A determining factor in the precision of the images generated by PALM measurements is the photon numbers that can be detected from the fluorophores. Dronpa is a reversibly photoswitchable fluorescent protein that has been successfully used in PALM experiments. The number of photons per switching cycle that can be acquired for Dronpa depends on its off-switching rate, limiting the number of photons that can be recorded. In this study we report our discovery that the tetrameric ancestor of Dronpa, 22G, shows slower switching, and develop a mutant that displays switching kinetics between those of Dronpa and 22G. We show that the kinetics of the photoswitching are strongly related to self-association of the protein, supporting our view of dynamic flexibility as determining in the photoswitching. Similarly we find that higher-resolution PALM images can be acquired with slower-switching proteins due to their higher number of emitted photons per switching cycle.

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Year:  2010        PMID: 20126801     DOI: 10.1039/b9pp00124g

Source DB:  PubMed          Journal:  Photochem Photobiol Sci        ISSN: 1474-905X            Impact factor:   3.982


  15 in total

1.  Protein-flexibility mediated coupling between photoswitching kinetics and surrounding viscosity of a photochromic fluorescent protein.

Authors:  Ya-Ting Kao; Xinxin Zhu; Wei Min
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-10       Impact factor: 11.205

2.  A unique series of reversibly switchable fluorescent proteins with beneficial properties for various applications.

Authors:  Hao Chang; Mingshu Zhang; Wei Ji; Juanjuan Chen; Yongdeng Zhang; Bei Liu; Jingze Lu; Junlong Zhang; Pingyong Xu; Tao Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-28       Impact factor: 11.205

3.  Membrane distribution of the glycine receptor α3 studied by optical super-resolution microscopy.

Authors:  Kristof Notelaers; Susana Rocha; Rik Paesen; Nina Swinnen; Jeroen Vangindertael; Jochen C Meier; Jean-Michel Rigo; Marcel Ameloot; Johan Hofkens
Journal:  Histochem Cell Biol       Date:  2014-02-20       Impact factor: 4.304

Review 4.  Phototransformable fluorescent proteins: which one for which application?

Authors:  Virgile Adam
Journal:  Histochem Cell Biol       Date:  2014-02-13       Impact factor: 4.304

5.  Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter.

Authors:  Premashis Manna; Sheng-Ting Hung; Srijit Mukherjee; Pia Friis; David M Simpson; Maria N Lo; Amy E Palmer; Ralph Jimenez
Journal:  Integr Biol (Camb)       Date:  2018-09-17       Impact factor: 2.192

6.  Molecular basis of photochromism of a fluorescent protein revealed by direct 13C detection under laser illumination.

Authors:  Hideaki Mizuno; Tapas Kumar Mal; Markus Wälchli; Takashi Fukano; Mitsuhiko Ikura; Atsushi Miyawaki
Journal:  J Biomol NMR       Date:  2010-10-30       Impact factor: 2.835

7.  Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa.

Authors:  Marius Kaucikas; Ann Fitzpatrick; Elana Bryan; Abelone Struve; Robert Henning; Irina Kosheleva; Vukica Srajer; Gerrit Groenhof; Jasper J Van Thor
Journal:  Proteins       Date:  2015-01-13

8.  A role for sphingomyelin-rich lipid domains in the accumulation of phosphatidylinositol-4,5-bisphosphate to the cleavage furrow during cytokinesis.

Authors:  Mitsuhiro Abe; Asami Makino; Françoise Hullin-Matsuda; Keiju Kamijo; Yoshiko Ohno-Iwashita; Kentaro Hanada; Hideaki Mizuno; Atsushi Miyawaki; Toshihide Kobayashi
Journal:  Mol Cell Biol       Date:  2012-02-13       Impact factor: 4.272

Review 9.  Photoswitchable fluorescent proteins: ten years of colorful chemistry and exciting applications.

Authors:  Xin X Zhou; Michael Z Lin
Journal:  Curr Opin Chem Biol       Date:  2013-07-19       Impact factor: 8.822

Review 10.  Photocontrollable fluorescent proteins for superresolution imaging.

Authors:  Daria M Shcherbakova; Prabuddha Sengupta; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

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