Literature DB >> 25524427

Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa.

Marius Kaucikas1, Ann Fitzpatrick, Elana Bryan, Abelone Struve, Robert Henning, Irina Kosheleva, Vukica Srajer, Gerrit Groenhof, Jasper J Van Thor.   

Abstract

The fluorescent protein Dronpa undergoes reversible photoswitching reactions between the bright "on" and dark "off" states via photoisomerization and proton transfer reactions. We report the room temperature crystal structure of the fast switching Met159Thr mutant of Dronpa at 2.0-Å resolution in the bright on state. Structural differences with the wild type include shifted backbone positions of strand β8 containing Thr159 as well as an altered A-C dimer interface involving strands β7, β8, β10, and β11. The Met159Thr mutation increases the cavity volume for the p-hydroxybenzylidene-imidazolinone chromophore as a result of both the side chain difference and the backbone positional differences.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  Dronpa; X-ray structure; molecular dynamics; reversibly photoswitchable fluorescent protein; room temperature

Mesh:

Substances:

Year:  2015        PMID: 25524427      PMCID: PMC4494737          DOI: 10.1002/prot.24742

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  27 in total

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4.  Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity.

Authors:  Teresa Paramo; Alexandra East; Diana Garzón; Martin B Ulmschneider; Peter J Bond
Journal:  J Chem Theory Comput       Date:  2014-05-13       Impact factor: 6.006

5.  1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.

Authors:  Andre C Stiel; Simon Trowitzsch; Gert Weber; Martin Andresen; Christian Eggeling; Stefan W Hell; Stefan Jakobs; Markus C Wahl
Journal:  Biochem J       Date:  2007-02-15       Impact factor: 3.857

6.  Putting super-resolution fluorescence microscopy to work.

Authors:  Jennifer Lippincott-Schwartz; Suliana Manley
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

7.  Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

8.  Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa.

Authors:  Satoshi Habuchi; Ryoko Ando; Peter Dedecker; Wendy Verheijen; Hideaki Mizuno; Atsushi Miyawaki; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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