Literature DB >> 24522394

Phototransformable fluorescent proteins: which one for which application?

Virgile Adam1.   

Abstract

In these last two decades , fluorescent proteins (FPs) have become highly valued imaging tools for cell biology, owing to their compatibility with living samples, their low levels of invasiveness and the possibility to specifically fuse them to a variety of proteins of interest. Remarkably, the recent development of phototransformable fluorescent proteins (PTFPs) has made it possible to conceive optical imaging experiments that were unimaginable only a few years ago. For example, it is nowadays possible to monitor intra- or intercellular trafficking, to optically individualize single cells in tissues or to observe single molecules in live cells. The tagging specificity brought by these genetically encoded highlighters leads to constant progress in the engineering of increasingly powerful, versatile and non-cytotoxic FPs. This review is focused on the recent developments of PTFPs and highlights their contribution to studies within cells, tissues and even living organisms. The aspects of single-molecule localization microscopy, intracellular tracking of photoactivated molecules, applications of PTFPs in biotechnology/optobiology and complementarities between PTFPs and other microscopy techniques are particularly discussed.

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Substances:

Year:  2014        PMID: 24522394     DOI: 10.1007/s00418-014-1190-5

Source DB:  PubMed          Journal:  Histochem Cell Biol        ISSN: 0948-6143            Impact factor:   4.304


  163 in total

1.  Frequent fusion and fission of plant mitochondria with unequal nucleoid distribution.

Authors:  Shin-ichi Arimura; Junko Yamamoto; Gen Paul Aida; Mikio Nakazono; Nobuhiro Tsutsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-10       Impact factor: 11.205

Review 2.  Live-cell imaging with EosFP and other photoactivatable marker proteins of the GFP family.

Authors:  Jörg Wiedenmann; G Ulrich Nienhaus
Journal:  Expert Rev Proteomics       Date:  2006-06       Impact factor: 3.940

3.  Highlighted generation of fluorescence signals using simultaneous two-color irradiation on Dronpa mutants.

Authors:  Ryoko Ando; Cristina Flors; Hideaki Mizuno; Johan Hofkens; Atsushi Miyawaki
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

4.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

5.  Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy.

Authors:  Andre C Stiel; Martin Andresen; Hannes Bock; Michael Hilbert; Jessica Schilde; Andreas Schönle; Christian Eggeling; Alexander Egner; Stefan W Hell; Stefan Jakobs
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

6.  Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis.

Authors:  Prabuddha Sengupta; Jennifer Lippincott-Schwartz
Journal:  Bioessays       Date:  2012-03-23       Impact factor: 4.345

7.  A FRET-facilitated photoswitching using an orange fluorescent protein with the fast photoconversion kinetics.

Authors:  Oksana M Subach; David Entenberg; John S Condeelis; Vladislav V Verkhusha
Journal:  J Am Chem Soc       Date:  2012-08-27       Impact factor: 15.419

8.  A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.

Authors:  Oksana M Subach; George H Patterson; Li-Min Ting; Yarong Wang; John S Condeelis; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-07-31       Impact factor: 28.547

9.  Highlighted Ca²⁺ imaging with a genetically encoded 'caged' indicator.

Authors:  Tomoki Matsuda; Kazuki Horikawa; Kenta Saito; Takeharu Nagai
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Optimization of cell morphology measurement via single-molecule tracking PALM.

Authors:  Nicholas A Frost; Hsiangmin E Lu; Thomas A Blanpied
Journal:  PLoS One       Date:  2012-05-03       Impact factor: 3.240

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  7 in total

Review 1.  The Histochemistry and Cell Biology pandect: the year 2014 in review.

Authors:  Douglas J Taatjes; Jürgen Roth
Journal:  Histochem Cell Biol       Date:  2015-03-06       Impact factor: 4.304

2.  In this special issue.

Authors:  Jürgen Roth; Mike Heilemann
Journal:  Histochem Cell Biol       Date:  2014-06-05       Impact factor: 4.304

3.  Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.

Authors:  Nadya V Pletneva; Sergei Pletnev; Alexey A Pakhomov; Rita V Chertkova; Vladimir I Martynov; Liya Muslinkina; Zbigniew Dauter; Vladimir Z Pletnev
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-07-13       Impact factor: 7.652

Review 4.  Applications of phototransformable fluorescent proteins for tracking the dynamics of cellular components.

Authors:  Ina Nemet; Philip Ropelewski; Yoshikazu Imanishi
Journal:  Photochem Photobiol Sci       Date:  2015-10       Impact factor: 3.982

5.  Optical Tools to Investigate Cellular Activity in the Intestinal Wall.

Authors:  Werend Boesmans; Marlene M Hao; Pieter Vanden Berghe
Journal:  J Neurogastroenterol Motil       Date:  2015-07-30       Impact factor: 4.924

Review 6.  Preclinical imaging methods for assessing the safety and efficacy of regenerative medicine therapies.

Authors:  Lauren Scarfe; Nathalie Brillant; J Dinesh Kumar; Noura Ali; Ahmed Alrumayh; Mohammed Amali; Stephane Barbellion; Vendula Jones; Marije Niemeijer; Sophie Potdevin; Gautier Roussignol; Anatoly Vaganov; Ivana Barbaric; Michael Barrow; Neal C Burton; John Connell; Francesco Dazzi; Josefina Edsbagge; Neil S French; Julie Holder; Claire Hutchinson; David R Jones; Tammy Kalber; Cerys Lovatt; Mark F Lythgoe; Sara Patel; P Stephen Patrick; Jacqueline Piner; Jens Reinhardt; Emanuelle Ricci; James Sidaway; Glyn N Stacey; Philip J Starkey Lewis; Gareth Sullivan; Arthur Taylor; Bettina Wilm; Harish Poptani; Patricia Murray; Chris E P Goldring; B Kevin Park
Journal:  NPJ Regen Med       Date:  2017-10-19

Review 7.  Fluorescent Protein Approaches in Alpha Herpesvirus Research.

Authors:  Ian B Hogue; Jens B Bosse; Esteban A Engel; Julian Scherer; Jiun-Ruey Hu; Tony Del Rio; Lynn W Enquist
Journal:  Viruses       Date:  2015-11-19       Impact factor: 5.048

  7 in total

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