Literature DB >> 21052778

Molecular basis of photochromism of a fluorescent protein revealed by direct 13C detection under laser illumination.

Hideaki Mizuno1, Tapas Kumar Mal, Markus Wälchli, Takashi Fukano, Mitsuhiko Ikura, Atsushi Miyawaki.   

Abstract

Dronpa is a green fluorescent protein homologue with a photochromic property. A green laser illumination reversibly converts Dronpa from a green-emissive bright state to a non-emissive dark state, and ultraviolet illumination converts it to the bright state. We have employed solution NMR to understand the underlying molecular mechanism of the photochromism. The detail characterization of Dronpa is hindered as it is metastable in the dark state and spontaneously converts to the bright state. To circumvent this issue, we have designed in magnet laser illumination device. By combining the device with a 150-mW argon laser at 514.5 nm, we have successfully converted and maintained Dronpa in the dark state in the NMR tube by continuous illumination during the NMR experiments. We have employed direct-detection of (13)C nuclei from the carbon skeleton of the chromophore for detailed characterization of chromophore in both states of Dronpa by using the Bruker TCI cryoprobe. The results from NMR data have provided direct evidence of the double bond formation between C(α) and C(β) of Y63 in the chromophore, the β-barrel structure in solution, and the ionized and protonated state of Y63 hydroxyl group in the bright and dark states, respectively. These studies have also revealed that a part of β-barrel around the chromophore becomes polymorphic only in the dark state, which may be critical to make the fluorescence dim by increasing the contribution of non-emissive vibrational relaxation pathways.

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Year:  2010        PMID: 21052778     DOI: 10.1007/s10858-010-9453-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  24 in total

1.  NMR experiments for the study of photointermediates: application to the photoactive yellow protein.

Authors:  G Rubinstenn; G W Vuister; N Zwanenburg; K J Hellingwerf; R Boelens; R Kaptein
Journal:  J Magn Reson       Date:  1999-04       Impact factor: 2.229

2.  1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.

Authors:  Andre C Stiel; Simon Trowitzsch; Gert Weber; Martin Andresen; Christian Eggeling; Stefan W Hell; Stefan Jakobs; Markus C Wahl
Journal:  Biochem J       Date:  2007-02-15       Impact factor: 3.857

3.  Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S.

Authors:  Ki-Hyun Nam; Oh Yeun Kwon; Kanako Sugiyama; Won-Ho Lee; Young Kwan Kim; Hyun Kyu Song; Eunice Eunkyung Kim; Sam-Yong Park; Hyesung Jeon; Kwang Yeon Hwang
Journal:  Biochem Biophys Res Commun       Date:  2007-01-24       Impact factor: 3.575

4.  Structural basis for reversible photoswitching in Dronpa.

Authors:  Martin Andresen; Andre C Stiel; Simon Trowitzsch; Gert Weber; Christian Eggeling; Markus C Wahl; Stefan W Hell; Stefan Jakobs
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-23       Impact factor: 11.205

5.  Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.

Authors:  Hideaki Mizuno; Tapas Kumar Mal; Markus Wälchli; Akihiro Kikuchi; Takashi Fukano; Ryoko Ando; Jeyaraman Jeyakanthan; Junichiro Taka; Yoshitsugu Shiro; Mitsuhiko Ikura; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-23       Impact factor: 11.205

6.  The 1.7 A crystal structure of Dronpa: a photoswitchable green fluorescent protein.

Authors:  Pascal G Wilmann; Kristina Turcic; Jion M Battad; Matthew C J Wilce; Rodney J Devenish; Mark Prescott; Jamie Rossjohn
Journal:  J Mol Biol       Date:  2006-09-03       Impact factor: 5.469

7.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

8.  13C-13C NOESY: an attractive alternative for studying large macromolecules.

Authors:  Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Detlef Moskau; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

9.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  5 in total

Review 1.  Super-resolution localization microscopy with photoactivatable fluorescent marker proteins.

Authors:  Per Niklas Hedde; G Ulrich Nienhaus
Journal:  Protoplasma       Date:  2013-10-27       Impact factor: 3.356

Review 2.  Phototransformable fluorescent proteins: which one for which application?

Authors:  Virgile Adam
Journal:  Histochem Cell Biol       Date:  2014-02-13       Impact factor: 4.304

3.  NMR Reveals Light-Induced Changes in the Dynamics of a Photoswitchable Fluorescent Protein.

Authors:  Nina-Eleni Christou; Isabel Ayala; Karine Giandoreggio-Barranco; Martin Byrdin; Virgile Adam; Dominique Bourgeois; Bernhard Brutscher
Journal:  Biophys J       Date:  2019-11-02       Impact factor: 4.033

4.  X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein.

Authors:  Craig Don Paul; Daouda A K Traore; Seth Olsen; Rodney J Devenish; Devin W Close; Toby D M Bell; Andrew Bradbury; Matthew C J Wilce; Mark Prescott
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

5.  Ground-state proton transfer kinetics in green fluorescent protein.

Authors:  Luke M Oltrogge; Quan Wang; Steven G Boxer
Journal:  Biochemistry       Date:  2014-09-11       Impact factor: 3.162

  5 in total

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