Literature DB >> 30963664

Cryo-EM-On-a-Chip: Custom-Designed Substrates for the 3D Analysis of Macromolecules.

Nick A Alden1,2,3, A Cameron Varano1,2,3,4,5, William J Dearnaley1,2,3,5, Maria J Solares1,3,4,5, William Y Luqiu1, Yanping Liang1, Zhi Sheng1, Sarah M McDonald6, John Damiano7, Jennifer McConnell7, Madeline J Dukes7, Deborah F Kelly1,2,3,5.   

Abstract

The fight against human disease requires a multidisciplinary scientific approach. Applying tools from seemingly unrelated areas, such as materials science and molecular biology, researchers can overcome long-standing challenges to improve knowledge of molecular pathologies. Here, custom-designed substrates composed of silicon nitride (SiN) are used to study the 3D attributes of tumor suppressor proteins that function in DNA repair events. New on-chip preparation strategies enable the isolation of native protein complexes from human cancer cells. Combined techniques of cryo-electron microscopy (EM) and molecular modeling reveal a new modified form of the p53 tumor suppressor present in aggressive glioblastoma multiforme cancer cells. Taken together, the findings provide a radical new design for cryo-EM substrates to evaluate the structures of disease-related macromolecules.
© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  breast cancer; cryo-electron microscopy; glioblastoma multiforme; p53; silicon nitride

Year:  2019        PMID: 30963664      PMCID: PMC6534443          DOI: 10.1002/smll.201900918

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  16 in total

1.  How good can cryo-EM become?

Authors:  Robert M Glaeser
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

2.  Structural basis of DNA recognition by p53 tetramers.

Authors:  Malka Kitayner; Haim Rozenberg; Naama Kessler; Dov Rabinovich; Lihi Shaulov; Tali E Haran; Zippora Shakked
Journal:  Mol Cell       Date:  2006-06-23       Impact factor: 17.970

3.  Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films.

Authors:  Daniel Rhinow; Werner Kühlbrandt
Journal:  Ultramicroscopy       Date:  2007-11-21       Impact factor: 2.689

4.  Reconstruction of three dimensional structures from electron micrographs.

Authors:  D J De Rosier; A Klug
Journal:  Nature       Date:  1968-01-13       Impact factor: 49.962

5.  Silicon nitride windows for electron microscopy of whole cells.

Authors:  E A Ring; D B Peckys; M J Dukes; J P Baudoin; N de Jonge
Journal:  J Microsc       Date:  2011-07-19       Impact factor: 1.758

6.  Cryomesh: a new substrate for cryo-electron microscopy.

Authors:  Craig Yoshioka; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2010-02       Impact factor: 4.127

7.  Structural analysis of BRCA1 reveals modification hotspot.

Authors:  Yanping Liang; William J Dearnaley; A Cameron Varano; Carly E Winton; Brian L Gilmore; Nick A Alden; Zhi Sheng; Deborah F Kelly
Journal:  Sci Adv       Date:  2017-09-20       Impact factor: 14.136

8.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

9.  Semi-automated selection of cryo-EM particles in RELION-1.3.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2014-12-06       Impact factor: 2.867

10.  Cryo-EM structures of tau filaments from Alzheimer's disease.

Authors:  Anthony W P Fitzpatrick; Benjamin Falcon; Shaoda He; Alexey G Murzin; Garib Murshudov; Holly J Garringer; R Anthony Crowther; Bernardino Ghetti; Michel Goedert; Sjors H W Scheres
Journal:  Nature       Date:  2017-07-05       Impact factor: 49.962

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  3 in total

1.  High-Resolution Imaging of Human Cancer Proteins Using Microprocessor Materials.

Authors:  Maria J Solares; G M Jonaid; William Y Luqiu; Samantha Berry; Janki Khadela; Yanping Liang; Madison C Evans; Kevin J Pridham; William J Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Chembiochem       Date:  2022-07-14       Impact factor: 3.461

2.  Microchip-Based Structure Determination of Disease-Relevant p53.

Authors:  Maria J Solares; G M Jonaid; William Y Luqiu; Yanping Liang; Madison C Evans; William J Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Anal Chem       Date:  2020-10-30       Impact factor: 6.986

3.  Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy.

Authors:  Michael A Casasanta; G M Jonaid; Liam Kaylor; William Y Luqiu; Maria J Solares; Mariah L Schroen; William J Dearnaley; Jarad Wilson; Madeline J Dukes; Deborah F Kelly
Journal:  Nanoscale       Date:  2021-04-12       Impact factor: 7.790

  3 in total

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