Literature DB >> 21185452

Images of paraffin monolayer crystals with perfect contrast: minimization of beam-induced specimen motion.

R M Glaeser1, G McMullan, A R Faruqi, R Henderson.   

Abstract

Quantitative analysis of electron microscope images of organic and biological two-dimensional crystals has previously shown that the absolute contrast reached only a fraction of that expected theoretically from the electron diffraction amplitudes. The accepted explanation for this is that irradiation of the specimen causes beam-induced charging or movement, which in turn causes blurring of the image due to image or specimen movement. In this paper, we used three different approaches to try to overcome this image-blurring problem in monolayer crystals of paraffin. Our first approach was to use an extreme form of spotscan imaging, in which a single image was assembled on film by the successive illumination of up to 50,000 spots, each of a diameter of around 7 nm. The second approach was to use the Medipix II detector with its zero-noise readout to assemble a time-sliced series of images of the same area in which each frame from a movie with up to 400 frames had an exposure of only 500 electrons. In the third approach, we simply used a much thicker carbon support film to increase the physical strength and conductivity of the support. Surprisingly, the first two methods involving dose fractionation in space or time produced only partial improvements in contrast whereas the third approach produced many virtually perfect images, where the absolute contrast predicted from the electron diffraction amplitudes was observed in the images. We conclude that it is possible to obtain consistently almost perfect images of beam-sensitive specimens if they are attached to an appropriately strong and conductive support; however great care is needed in practice and the problem remains of how to best image ice-embedded biological structures in the absence of a strong, conductive support film.
Copyright © 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 21185452      PMCID: PMC3741612          DOI: 10.1016/j.ultramic.2010.10.010

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  27 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Stroboscopic image capture: reducing the dose per frame by a factor of 30 does not prevent beam-induced specimen movement in paraffin.

Authors:  Dieter Typke; Christopher J Gilpin; Kenneth H Downing; Robert M Glaeser
Journal:  Ultramicroscopy       Date:  2006-07-24       Impact factor: 2.689

3.  Observations on the behavior of vitreous ice at approximately 82 and approximately 12 K.

Authors:  Elizabeth R Wright; Cristina V Iancu; William F Tivol; Grant J Jensen
Journal:  J Struct Biol       Date:  2006-01-05       Impact factor: 2.867

4.  Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate.

Authors:  E Majorovits; B Barton; K Schultheiss; F Pérez-Willard; D Gerthsen; R R Schröder
Journal:  Ultramicroscopy       Date:  2006-08-14       Impact factor: 2.689

5.  Design of a microfabricated, two-electrode phase-contrast element suitable for electron microscopy.

Authors:  Rossana Cambie; Kenneth H Downing; Dieter Typke; Robert M Glaeser; Jian Jin
Journal:  Ultramicroscopy       Date:  2006-10-12       Impact factor: 2.689

6.  Single particle analysis based on Zernike phase contrast transmission electron microscopy.

Authors:  Radostin Danev; Kuniaki Nagayama
Journal:  J Struct Biol       Date:  2007-11-06       Impact factor: 2.867

7.  Spot-scan imaging in transmission electron microscopy.

Authors:  K H Downing
Journal:  Science       Date:  1991-01-04       Impact factor: 47.728

8.  Mechanical stress and reactivity in organic solids.

Authors:  J M McBride; B E Segmuller; M D Hollingsworth; D E Mills; B A Weber
Journal:  Science       Date:  1986-11-14       Impact factor: 47.728

9.  Experimental observation of the improvement in MTF from backthinning a CMOS direct electron detector.

Authors:  G McMullan; A R Faruqi; R Henderson; N Guerrini; R Turchetta; A Jacobs; G van Hoften
Journal:  Ultramicroscopy       Date:  2009-05-18       Impact factor: 2.689

10.  Electron imaging with Medipix2 hybrid pixel detector.

Authors:  G McMullan; D M Cattermole; S Chen; R Henderson; X Llopart; C Summerfield; L Tlustos; A R Faruqi
Journal:  Ultramicroscopy       Date:  2006-11-13       Impact factor: 2.689

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  27 in total

1.  Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Authors:  Anna-Clare Milazzo; Anchi Cheng; Arne Moeller; Dmitry Lyumkis; Erica Jacovetty; James Polukas; Mark H Ellisman; Nguyen-Huu Xuong; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2011-09-10       Impact factor: 2.867

Review 2.  Single particle electron cryo-microscopy of a mammalian ion channel.

Authors:  Maofu Liao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2014-03-25       Impact factor: 6.809

3.  Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0.

Authors:  Po-Lin Chiu; Xueming Li; Zongli Li; Brian Beckett; Axel F Brilot; Nikolaus Grigorieff; David A Agard; Yifan Cheng; Thomas Walz
Journal:  J Struct Biol       Date:  2015-08-28       Impact factor: 2.867

Review 4.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 5.  Problems in obtaining perfect images by single-particle electron cryomicroscopy of biological structures in amorphous ice.

Authors:  Richard Henderson; Greg McMullan
Journal:  Microscopy (Oxf)       Date:  2013-01-04       Impact factor: 1.571

6.  Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography.

Authors:  Jesús G Galaz-Montoya; Corey W Hecksel; Philip R Baldwin; Eryu Wang; Scott C Weaver; Michael F Schmid; Steven J Ludtke; Wah Chiu
Journal:  J Struct Biol       Date:  2016-03-22       Impact factor: 2.867

7.  ResLog plots as an empirical metric of the quality of cryo-EM reconstructions.

Authors:  Scott M Stagg; Alex J Noble; Michael Spilman; Michael S Chapman
Journal:  J Struct Biol       Date:  2013-12-30       Impact factor: 2.867

Review 8.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

Review 9.  Electron crystallography--the waking beauty of structural biology.

Authors:  Christopher R Pope; Vinzenz M Unger
Journal:  Curr Opin Struct Biol       Date:  2012-04-21       Impact factor: 6.809

10.  Beam-induced motion of vitrified specimen on holey carbon film.

Authors:  Axel F Brilot; James Z Chen; Anchi Cheng; Junhua Pan; Stephen C Harrison; Clinton S Potter; Bridget Carragher; Richard Henderson; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2012-02-16       Impact factor: 2.867

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