Literature DB >> 20080548

Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures.

Alke Meents1, Sascha Gutmann, Armin Wagner, Clemens Schulze-Briese.   

Abstract

Radiation damage is the major impediment for obtaining structural information from biological samples by using ionizing radiation such as x-rays or electrons. The knowledge of underlying processes especially at cryogenic temperatures is still fragmentary, and a consistent mechanism has not been found yet. By using a combination of single-crystal x-ray diffraction, small-angle scattering, and qualitative and quantitative radiolysis experiments, we show that hydrogen gas, formed inside the sample during irradiation, rather than intramolecular bond cleavage between non-hydrogen atoms, is mainly responsible for the loss of high-resolution information and contrast in diffraction experiments and microscopy. The experiments that are presented in this paper cover a temperature range between 5 and 160 K and reveal that the commonly used temperature in x-ray crystallography of 100 K is not optimal in terms of minimizing radiation damage and thereby increasing the structural information obtainable in a single experiment. At 50 K, specific radiation damage to disulfide bridges is reduced by a factor of 4 compared to 100 K, and samples can tolerate a factor of 2.6 and 3.9 higher dose, as judged by the increase of R(free) values of elastase and cubic insulin crystals, respectively.

Entities:  

Mesh:

Year:  2009        PMID: 20080548      PMCID: PMC2798883          DOI: 10.1073/pnas.0905481107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Unit-cell volume change as a metric of radiation damage in crystals of macromolecules.

Authors:  Raimond B G Ravelli; Pascal Theveneau; Sean McSweeney; Martin Caffrey
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  Electron spin resonance and its application.

Authors:  R J COOK; D H WHIFFEN
Journal:  Phys Med Biol       Date:  1962-12       Impact factor: 3.609

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

4.  Specific chemical and structural damage to proteins produced by synchrotron radiation.

Authors:  M Weik; R B Ravelli; G Kryger; S McSweeney; M L Raves; M Harel; P Gros; I Silman; J Kroon; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

5.  A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography.

Authors:  Cristina V Iancu; Elizabeth R Wright; J Bernard Heymann; Grant J Jensen
Journal:  J Struct Biol       Date:  2006-01-04       Impact factor: 2.867

6.  Reduction of X-ray-induced radiation damage of macromolecular crystals by data collection at 15 K: a systematic study.

Authors:  A Meents; A Wagner; R Schneider; C Pradervand; E Pohl; C Schulze-Briese
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-02-21

7.  The PILATUS 1M detector.

Authors:  Ch Broennimann; E F Eikenberry; B Henrich; R Horisberger; G Huelsen; E Pohl; B Schmitt; C Schulze-Briese; M Suzuki; T Tomizaki; H Toyokawa; A Wagner
Journal:  J Synchrotron Radiat       Date:  2006-02-17       Impact factor: 2.616

8.  Photoreduction of the active site of the metalloprotein putidaredoxin by synchrotron radiation.

Authors:  Mary C Corbett; Matthew J Latimer; Thomas L Poulos; Irina F Sevrioukova; Keith O Hodgson; Britt Hedman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-08-17

9.  Beam damage to organic material is considerably reduced in cryo-electron microscopy.

Authors:  E Knapek; J Dubochet
Journal:  J Mol Biol       Date:  1980-08-05       Impact factor: 5.469

10.  Primary radiation damage of protein crystals by an intense synchrotron X-ray beam.

Authors:  T Y Teng; K Moffat
Journal:  J Synchrotron Radiat       Date:  2000-09-01       Impact factor: 2.616

View more
  64 in total

1.  Global radiation damage at 300 and 260 K with dose rates approaching 1 MGy s⁻¹.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse B Hopkins; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-01-17

2.  Fast high-pressure freezing of protein crystals in their mother liquor.

Authors:  Anja Burkhardt; Martin Warmer; Saravanan Panneerselvam; Armin Wagner; Athina Zouni; Carina Glöckner; Rudolph Reimer; Heinrich Hohenberg; Alke Meents
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-31

3.  Imaging protein structure in water at 2.7 nm resolution by transmission electron microscopy.

Authors:  Utkur M Mirsaidov; Haimei Zheng; Yosune Casana; Paul Matsudaira
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

4.  X-ray diffraction from membrane protein nanocrystals.

Authors:  M S Hunter; D P DePonte; D A Shapiro; R A Kirian; X Wang; D Starodub; S Marchesini; U Weierstall; R B Doak; J C H Spence; P Fromme
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

6.  Oxygen additions in serial femtosecond crystallographic protein structures.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-07-26       Impact factor: 6.725

Review 7.  Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination.

Authors:  Petra Fromme; John C H Spence
Journal:  Curr Opin Struct Biol       Date:  2011-08       Impact factor: 6.809

8.  Predicting the X-ray lifetime of protein crystals.

Authors:  Oliver B Zeldin; Sandor Brockhauser; John Bremridge; James M Holton; Elspeth F Garman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

9.  Energy dependence of site-specific radiation damage in protein crystals.

Authors:  Christina Homer; Laura Cooper; Ana Gonzalez
Journal:  J Synchrotron Radiat       Date:  2011-03-15       Impact factor: 2.616

10.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.