Literature DB >> 12409622

Unit-cell volume change as a metric of radiation damage in crystals of macromolecules.

Raimond B G Ravelli1, Pascal Theveneau, Sean McSweeney, Martin Caffrey.   

Abstract

The use of third-generation synchrotron sources has led to renewed interest in the effect that ionizing radiation has on crystalline biological materials. Simple criteria have been sought to study the effects systematically. The unit-cell volume of protein crystals shows a linear increase with absorbed dose and has therefore been proposed to be such a measure. This paper demonstrates that the increase is sample dependent, and thus it might not be a useful indicator when comparing different samples. For individual samples, however, the increase can be used to quantify ambient temperature and dose-rate effects. In this study, highly absorbing cubic crystals of holoferritin have been used to accurately determine how cell volume changes with absorbed dose. The experiments show that, for this protein, a dose-rate effect exists and that trapped radicals can be mobilized at ca 180 K.

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Year:  2002        PMID: 12409622     DOI: 10.1107/s0909049502014541

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  31 in total

1.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

2.  Strain relief at the active site of phosphoserine aminotransferase induced by radiation damage.

Authors:  Anatoly P Dubnovitsky; Raimond B G Ravelli; Alexander N Popov; Anastassios C Papageorgiou
Journal:  Protein Sci       Date:  2005-05-09       Impact factor: 6.725

3.  Evidence for liquid water during the high-density to low-density amorphous ice transition.

Authors:  Chae Un Kim; Buz Barstow; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-03       Impact factor: 11.205

4.  On the reproducibility of protein crystal structures: five atomic resolution structures of trypsin.

Authors:  Dorothee Liebschner; Miroslawa Dauter; Anna Brzuszkiewicz; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-07-17

5.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

6.  Energy dependence of site-specific radiation damage in protein crystals.

Authors:  Christina Homer; Laura Cooper; Ana Gonzalez
Journal:  J Synchrotron Radiat       Date:  2011-03-15       Impact factor: 2.616

7.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

8.  Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures.

Authors:  Alke Meents; Sascha Gutmann; Armin Wagner; Clemens Schulze-Briese
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

9.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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