Literature DB >> 21752635

Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination.

Petra Fromme1, John C H Spence.   

Abstract

The invention of free electron X-ray lasers has opened a new era for membrane protein structure determination with the recent first proof-of-principle of the new concept of femtosecond nanocrystallography. Structure determination is based on thousands of diffraction snapshots that are collected on a fully hydrated stream of nanocrystals. This review provides a summary of the method and describes how femtosecond X-ray crystallography overcomes the radiation-damage problem in X-ray crystallography, avoids the need for growth and freezing of large single crystals while offering a new method for direct digital phase determination by making use of the fully coherent nature of the X-ray beam. We briefly review the possibilities for time-resolved crystallography, and the potential for making 'molecular movies' of membrane proteins at work. Published by Elsevier Ltd.

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Year:  2011        PMID: 21752635      PMCID: PMC3413407          DOI: 10.1016/j.sbi.2011.06.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

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Authors:  P Jordan; P Fromme; H T Witt; O Klukas; W Saenger; N Krauss
Journal:  Nature       Date:  2001-06-21       Impact factor: 49.962

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Towards ETEM serial crystallography: Electron diffraction from liquid jets.

Authors:  D P Deponte; J T McKeown; U Weierstall; R B Doak; J C H Spence
Journal:  Ultramicroscopy       Date:  2010-12-01       Impact factor: 2.689

4.  X-ray diffraction from membrane protein nanocrystals.

Authors:  M S Hunter; D P DePonte; D A Shapiro; R A Kirian; X Wang; D Starodub; S Marchesini; U Weierstall; R B Doak; J C H Spence; P Fromme
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Soft-x-ray free-electron-laser interaction with materials.

Authors:  Stefan P Hau-Riege; Richard A London; Henry N Chapman; Magnus Bergh
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-17

6.  Predicting the coherent X-ray wavefront focal properties at the Linac Coherent Light Source (LCLS) X-ray free electron laser.

Authors:  Anton Barty; Regina Soufli; Tom McCarville; Sherry L Baker; Michael J Pivovaroff; Peter Stefan; Richard Bionta
Journal:  Opt Express       Date:  2009-08-31       Impact factor: 3.894

Review 7.  Small is beautiful: protein micro-crystallography.

Authors:  S Cusack; H Belrhali; A Bram; M Burghammer; A Perrakis; C Riekel
Journal:  Nat Struct Biol       Date:  1998-08

8.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

9.  Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals.

Authors:  Richard A Kirian; Thomas A White; James M Holton; Henry N Chapman; Petra Fromme; Anton Barty; Lukas Lomb; Andrew Aquila; Filipe R N C Maia; Andrew V Martin; Raimund Fromme; Xiaoyu Wang; Mark S Hunter; Kevin E Schmidt; John C H Spence
Journal:  Acta Crystallogr A       Date:  2011-02-16       Impact factor: 2.290

10.  The ID23-2 structural biology microfocus beamline at the ESRF.

Authors:  David Flot; Trevor Mairs; Thierry Giraud; Matias Guijarro; Marc Lesourd; Vicente Rey; Denis van Brussel; Christian Morawe; Christine Borel; Olivier Hignette; Joel Chavanne; Didier Nurizzo; Sean McSweeney; Edward Mitchell
Journal:  J Synchrotron Radiat       Date:  2009-12-05       Impact factor: 2.616

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  34 in total

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Authors:  A V Struts; A V Barmasov; M F Brown
Journal:  Opt Spectrosc       Date:  2015-05-27       Impact factor: 0.891

2.  Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves.

Authors:  Feng Guo; Weijie Zhou; Peng Li; Zhangming Mao; Neela H Yennawar; Jarrod B French; Tony Jun Huang
Journal:  Small       Date:  2015-02-01       Impact factor: 13.281

3.  Monitoring molecular nonadiabatic dynamics with femtosecond X-ray diffraction.

Authors:  Kochise Bennett; Markus Kowalewski; Jérémy R Rouxel; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

4.  Curvature forces in membrane lipid-protein interactions.

Authors:  Michael F Brown
Journal:  Biochemistry       Date:  2012-11-27       Impact factor: 3.162

5.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

6.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

7.  Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system.

Authors:  Christopher Kupitz; Ingo Grotjohann; Chelsie E Conrad; Shatabdi Roy-Chowdhury; Raimund Fromme; Petra Fromme
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

8.  Time-, frequency-, and wavevector-resolved x-ray diffraction from single molecules.

Authors:  Kochise Bennett; Jason D Biggs; Yu Zhang; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Chem Phys       Date:  2014-05-28       Impact factor: 3.488

9.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

10.  SIZE BASED NANOPARTICLE SEPARATION USING DIELECTROPHORETIC FOCUSING FOR FEMTOSECOND NANOCRYSTALLOGRAPHY OF MEMBRANE PROTEINS.

Authors:  Bahige Abdallah; Tzu-Chiao Chao; Petra Fromme; Alexandra Ros
Journal:  Micro Total Anal Syst       Date:  2012-10
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