Literature DB >> 21525641

Energy dependence of site-specific radiation damage in protein crystals.

Christina Homer1, Laura Cooper, Ana Gonzalez.   

Abstract

It is important to consider radiation damage to crystals caused by data collection when solving structures and critical when determining protein function, which can often depend on very subtle structural characteristics. In this study the rate of damage to specific sites in protein crystals cooled at 100 K is found to depend on the energy of the incident X-ray beam. Several lysozyme crystals were each subjected to 3-26 MGy of cumulative X-ray exposure by collecting multiple data sets from each crystal at either 9 keV or 14 keV. The integrated electron density surrounding each S atom in the structure was calculated for each data set and the change in electron density was evaluated as a function of dose at the two energies. The rate of electron density decrease per cubic Å per MGy was determined to be greater at 14 keV than at 9 keV for cysteine sulfurs involved in disulphide bridges; no statistically significant differences in the decay rates were found for methionine sulfurs. These preliminary results imply that it might be possible to minimize certain types of specific radiation damage by an appropriate choice of energy. Further experiments studying a variety of photolabile sites over a wider range of energies are needed to confirm this conclusion.

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Year:  2011        PMID: 21525641      PMCID: PMC3083911          DOI: 10.1107/S0909049511005504

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  39 in total

Review 1.  Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

Authors:  Peter O'Neill; David L Stevens; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  Unit-cell volume change as a metric of radiation damage in crystals of macromolecules.

Authors:  Raimond B G Ravelli; Pascal Theveneau; Sean McSweeney; Martin Caffrey
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

4.  On the influence of the incident photon energy on the radiation damage in crystalline biological samples.

Authors:  Manfred S Weiss; Santosh Panjikar; Christoph Mueller-Dieckmann; Paul A Tucker
Journal:  J Synchrotron Radiat       Date:  2005-04-14       Impact factor: 2.616

5.  On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength.

Authors:  Christoph Mueller-Dieckmann; Santosh Panjikar; Paul A Tucker; Manfred S Weiss
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16

6.  Dose dependence of radiation damage for protein crystals studied at various X-ray energies.

Authors:  Nobutaka Shimizu; Kunio Hirata; Kazuya Hasegawa; Go Ueno; Masaki Yamamoto
Journal:  J Synchrotron Radiat       Date:  2006-12-15       Impact factor: 2.616

7.  Photoreduction of the active site of the metalloprotein putidaredoxin by synchrotron radiation.

Authors:  Mary C Corbett; Matthew J Latimer; Thomas L Poulos; Irina F Sevrioukova; Keith O Hodgson; Britt Hedman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-08-17

8.  The optimum conditions to collect X-ray data from very small samples.

Authors:  John A Cowan; Colin Nave
Journal:  J Synchrotron Radiat       Date:  2008-07-22       Impact factor: 2.616

9.  Will reduced radiation damage occur with very small crystals?

Authors:  Colin Nave; Mark A Hill
Journal:  J Synchrotron Radiat       Date:  2005-04-14       Impact factor: 2.616

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
View more
  6 in total

1.  Radiation decay of thaumatin crystals at three X-ray energies.

Authors:  Dorothee Liebschner; Gerold Rosenbaum; Miroslawa Dauter; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-26

2.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

3.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

Review 4.  Identifying and quantifying radiation damage at the atomic level.

Authors:  Markus Gerstel; Charlotte M Deane; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2015-02-14       Impact factor: 2.616

5.  Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies.

Authors:  Kristin A Sutton; Paul J Black; Kermit R Mercer; Elspeth F Garman; Robin L Owen; Edward H Snell; William A Bernhard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-11-19

6.  Kinetic and structural studies of aldehyde oxidoreductase from Desulfovibrio gigas reveal a dithiolene-based chemistry for enzyme activation and inhibition by H(2)O(2).

Authors:  Jacopo Marangon; Hugo D Correia; Carlos D Brondino; José J G Moura; Maria J Romão; Pablo J González; Teresa Santos-Silva
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

  6 in total

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