Literature DB >> 27977883

A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.

Rachel D Cohen1, Gary J Pielak1,2,3.   

Abstract

Most knowledge of protein structure and function is derived from experiments performed with purified protein resuspended in dilute, buffered solutions. However, proteins function in the crowded, complex cellular environment. Although the first four levels of protein structure provide important information, a complete understanding requires consideration of quinary structure. Quinary structure comprises the transient interactions between macromolecules that provides organization and compartmentalization inside cells. We review the history of quinary structure in the context of several metabolic pathways, and the technological advances that have yielded recent insight into protein behavior in living cells. The evidence demonstrates that protein behavior in isolated solutions deviates from behavior in the physiological environment.
© 2016 The Protein Society.

Keywords:  metabolon; protein stability; protein structure; quinary structure

Mesh:

Year:  2017        PMID: 27977883      PMCID: PMC5326556          DOI: 10.1002/pro.3092

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  140 in total

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Authors:  Brenda S J Winkel
Journal:  Annu Rev Plant Biol       Date:  2004       Impact factor: 26.379

2.  Internal and global protein motion assessed with a fusion construct and in-cell NMR spectroscopy.

Authors:  Christopher O Barnes; William B Monteith; Gary J Pielak
Journal:  Chembiochem       Date:  2010-12-15       Impact factor: 3.164

3.  Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells.

Authors:  A Dhar; K Girdhar; D Singh; H Gelman; S Ebbinghaus; M Gruebele
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

Review 4.  Use of 19F NMR to probe protein structure and conformational changes.

Authors:  M A Danielson; J J Falke
Journal:  Annu Rev Biophys Biomol Struct       Date:  1996

5.  Quinary structure modulates protein stability in cells.

Authors:  William B Monteith; Rachel D Cohen; Austin E Smith; Emilio Guzman-Cisneros; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

6.  Organization of citric acid cycle enzymes into a multienzyme cluster.

Authors:  S J Barnes; P D Weitzman
Journal:  FEBS Lett       Date:  1986-06-09       Impact factor: 4.124

Review 7.  The random collision model and a critical assessment of diffusion and collision in mitochondrial electron transport.

Authors:  C R Hackenbrock; B Chazotte; S S Gupte
Journal:  J Bioenerg Biomembr       Date:  1986-10       Impact factor: 2.945

8.  Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.

Authors:  Qinghua Wang; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

9.  Molecular evolution, intracellular organization, and the quinary structure of proteins.

Authors:  E H McConkey
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

10.  Direct Evidence for Metabolon Formation and Substrate Channeling in Recombinant TCA Cycle Enzymes.

Authors:  Beyza Bulutoglu; Kristen E Garcia; Fei Wu; Shelley D Minteer; Scott Banta
Journal:  ACS Chem Biol       Date:  2016-09-01       Impact factor: 5.100

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  39 in total

1.  Ribosome Mediated Quinary Interactions Modulate In-Cell Protein Activities.

Authors:  Christopher M DeMott; Subhabrata Majumder; David S Burz; Sergey Reverdatto; Alexander Shekhtman
Journal:  Biochemistry       Date:  2017-08-03       Impact factor: 3.162

2.  Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Authors:  Shahar Sukenik; Pin Ren; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

Review 3.  Spatial Organization of Metabolic Enzyme Complexes in Cells.

Authors:  Danielle L Schmitt; Songon An
Journal:  Biochemistry       Date:  2017-06-16       Impact factor: 3.162

4.  Quinary interactions with an unfolded state ensemble.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-06-12       Impact factor: 6.725

5.  Protein shape modulates crowding effects.

Authors:  Alex J Guseman; Gerardo M Perez Goncalves; Shannon L Speer; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

Review 6.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

7.  Large cosolutes, small cosolutes, and dihydrofolate reductase activity.

Authors:  Luis C Acosta; Gerardo M Perez Goncalves; Gary J Pielak; Annelise H Gorensek-Benitez
Journal:  Protein Sci       Date:  2017-11-17       Impact factor: 6.725

Review 8.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

9.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

10.  Controlling and quantifying protein concentration in Escherichia coli.

Authors:  Shannon L Speer; Alex J Guseman; Jon B Patteson; Brandie M Ehrmann; Gary J Pielak
Journal:  Protein Sci       Date:  2019-05-22       Impact factor: 6.725

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