Literature DB >> 22998665

Alternative pathways of human islet amyloid polypeptide aggregation distinguished by (19)f nuclear magnetic resonance-detected kinetics of monomer consumption.

Yuta Suzuki1, Jeffrey R Brender, Kevin Hartman, Ayyalusamy Ramamoorthy, E Neil G Marsh.   

Abstract

Amyloid formation, a complex process involving many intermediate states, is proposed to be the driving force for amyloid-related toxicity in common degenerative diseases. Unfortunately, the details of this process have been obscured by the limitations in the methods that can follow this reaction in real time. We show that alternative pathways of aggregation can be distinguished by using (19)F nuclear magnetic resonance (NMR) to monitor monomer consumption along with complementary measurements of fibrillogenesis. The utility of this technique is demonstrated by tracking amyloid formation in the diabetes-related islet amyloid polypeptide (IAPP). Using this technique, we show IAPP fibrillizes without an appreciable buildup of nonfibrillar intermediates, in contrast to the well-studied Aβ and α-synuclein proteins. To further develop the usage of (19)F NMR, we have tracked the influence of the polyphenolic amyloid inhibitor epigallocatechin gallate (EGCG) on the aggregation pathway. Polyphenols have been shown to strongly inhibit amyloid formation in many systems. However, spectroscopic measurements of amyloid inhibition by these compounds can be severely compromised by background signals and competitive binding with extrinsic probes. Using (19)F NMR, we show that thioflavin T strongly competes with EGCG for binding sites on IAPP fibers. By comparing the rates of monomer consumption and fiber formation, we are able to show that EGCG stabilizes nonfibrillar large aggregates during fibrillogenesis.

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Year:  2012        PMID: 22998665      PMCID: PMC3543753          DOI: 10.1021/bi3012548

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  79 in total

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Authors:  Per Westermark; Arne Andersson; Gunilla T Westermark
Journal:  Physiol Rev       Date:  2011-07       Impact factor: 37.312

4.  Macromolecular crowding fails to fold a globular protein in cells.

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5.  Site-specific ¹⁹F NMR chemical shift and side chain relaxation analysis of a membrane protein labeled with an unnatural amino acid.

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Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

Review 6.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

7.  Residue-specific, real-time characterization of lag-phase species and fibril growth during amyloid formation: a combined fluorescence and IR study of p-cyanophenylalanine analogs of islet amyloid polypeptide.

Authors:  Peter Marek; Sudipta Mukherjee; Martin T Zanni; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2010-06-01       Impact factor: 5.469

8.  Rifampicin does not prevent amyloid fibril formation by human islet amyloid polypeptide but does inhibit fibril thioflavin-T interactions: implications for mechanistic studies of beta-cell death.

Authors:  Fanling Meng; Peter Marek; Kathryn J Potter; C Bruce Verchere; Daniel P Raleigh
Journal:  Biochemistry       Date:  2008-05-06       Impact factor: 3.162

9.  Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process.

Authors:  Jed J W Wiltzius; Stuart A Sievers; Michael R Sawaya; David Eisenberg
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

10.  Amyloid-beta-induced ion flux in artificial lipid bilayers and neuronal cells: resolving a controversy.

Authors:  Ricardo Capone; Felipe Garcia Quiroz; Panchika Prangkio; Inderjeet Saluja; Anna M Sauer; Mahealani R Bautista; Raymond S Turner; Jerry Yang; Michael Mayer
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  40 in total

1.  Structural characterization and inhibition of toxic amyloid-β oligomeric intermediates.

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Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

2.  Reduced Lipid Bilayer Thickness Regulates the Aggregation and Cytotoxicity of Amyloid-β.

Authors:  Kyle J Korshavn; Cristina Satriano; Yuxi Lin; Rongchun Zhang; Mark Dulchavsky; Anirban Bhunia; Magdalena I Ivanova; Young-Ho Lee; Carmelo La Rosa; Mi Hee Lim; Ayyalusamy Ramamoorthy
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Review 3.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

Authors:  Akira Naito; Nobuaki Matsumori; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

4.  Zinc boosts EGCG's hIAPP amyloid Inhibition both in solution and membrane.

Authors:  Young-Ho Lee; Yuxi Lin; Sarah J Cox; Misaki Kinoshita; Bikash R Sahoo; Magdalena Ivanova; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2018-11-22       Impact factor: 3.036

5.  Escherichia coli Topoisomerase IV E Subunit and an Inhibitor Binding Mode Revealed by NMR Spectroscopy.

Authors:  Yan Li; Ying Lei Wong; Fui Mee Ng; Boping Liu; Yun Xuan Wong; Zhi Ying Poh; Shuang Liu; Siew Wen Then; Michelle Yueqi Lee; Hui Qi Ng; Qiwei Huang; Alvin W Hung; Joseph Cherian; Jeffrey Hill; Thomas H Keller; CongBao Kang
Journal:  J Biol Chem       Date:  2016-06-30       Impact factor: 5.157

Review 6.  Islet amyloid: from fundamental biophysics to mechanisms of cytotoxicity.

Authors:  Ping Cao; Peter Marek; Harris Noor; Vadim Patsalo; Ling-Hsien Tu; Hui Wang; Andisheh Abedini; Daniel P Raleigh
Journal:  FEBS Lett       Date:  2013-02-01       Impact factor: 4.124

7.  Insights into antiamyloidogenic properties of the green tea extract (-)-epigallocatechin-3-gallate toward metal-associated amyloid-β species.

Authors:  Suk-Joon Hyung; Alaina S DeToma; Jeffrey R Brender; Sanghyun Lee; Subramanian Vivekanandan; Akiko Kochi; Jung-Suk Choi; Ayyalusamy Ramamoorthy; Brandon T Ruotolo; Mi Hee Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-20       Impact factor: 11.205

8.  Amyloid-β-neuropeptide interactions assessed by ion mobility-mass spectrometry.

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Journal:  Phys Chem Chem Phys       Date:  2013-04-24       Impact factor: 3.676

9.  Toward the molecular mechanism(s) by which EGCG treatment remodels mature amyloid fibrils.

Authors:  Fernando L Palhano; Jiyong Lee; Neil P Grimster; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2013-05-07       Impact factor: 15.419

10.  Resolution of oligomeric species during the aggregation of Aβ1-40 using (19)F NMR.

Authors:  Yuta Suzuki; Jeffrey R Brender; Molly T Soper; Janarthanan Krishnamoorthy; Yunlong Zhou; Brandon T Ruotolo; Nicholas A Kotov; Ayyalusamy Ramamoorthy; E Neil G Marsh
Journal:  Biochemistry       Date:  2013-03-08       Impact factor: 3.162

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