Literature DB >> 8800468

Use of 19F NMR to probe protein structure and conformational changes.

M A Danielson1, J J Falke.   

Abstract

19F NMR has proven to be a powerful technique in the study of protein structure and dynamics because the 19F nucleus is easily incorporated at specific labeling sites, where it provides a relatively nonperturbing yet sensitive probe with no background signals. Recent applications of 19F NMR in mapping out structural and functional features of proteins, including the galactose-binding protein, the transmembrane aspartate receptor, the CheY protein, dihydrofolate reductase, elongation factor-Tu, and D-lactose dehydrogenase, illustrate the utility of 19F NMR in the analysis of protein conformational states even in molecules too large or unstable for full NMR structure determination. These studies rely on the fact that the chemical shift of 19F is extremely sensitive to changes in the local conformational environment, including van der Waals packing interactions and local electrostatic fields. Additional information is provided by solvent-induced isotope shifts or line broadening of the 19F resonance by aqueous and membrane-bound paramagnetic probes, which may reveal the proximity of a 19F label to bulk solvent or a biological membrane. Finally, the effect of exchanging conformations on the 19F resonance can directly determine the kinetic parameters of the conformational transition.

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Year:  1996        PMID: 8800468      PMCID: PMC2899692          DOI: 10.1146/annurev.bb.25.060196.001115

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  84 in total

1.  Magnesium binding to the bacterial chemotaxis protein CheY results in large conformational changes involving its functional surface.

Authors:  L Bellsolell; J Prieto; L Serrano; M Coll
Journal:  J Mol Biol       Date:  1994-05-13       Impact factor: 5.469

2.  Aspartate receptors of Escherichia coli and Salmonella typhimurium bind ligand with negative and half-of-the-sites cooperativity.

Authors:  H P Biemann; D E Koshland
Journal:  Biochemistry       Date:  1994-01-25       Impact factor: 3.162

3.  19F NMR spectroscopy of [6-19F]tryptophan-labeled Escherichia coli dihydrofolate reductase: equilibrium folding and ligand binding studies.

Authors:  S D Hoeltzli; C Frieden
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

4.  Fluorine-19 nuclear magnetic resonance spectroscopic study of fluorophenylalanine- and fluorotryptophan-labeled avian egg white lysozymes.

Authors:  C Lian; H Le; B Montez; J Patterson; S Harrell; D Laws; I Matsumura; J Pearson; E Oldfield
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

5.  Signal transduction in chemotaxis. A propagating conformation change upon phosphorylation of CheY.

Authors:  D F Lowry; A F Roth; P B Rupert; F W Dahlquist; F J Moy; P J Domaille; P Matsumura
Journal:  J Biol Chem       Date:  1994-10-21       Impact factor: 5.157

6.  Conformational differences between complexes of elongation factor Tu studied 19F-NMR spectroscopy.

Authors:  J F Eccleston; D P Molloy; M G Hinds; R W King; J Feeney
Journal:  Eur J Biochem       Date:  1993-12-15

7.  A 19F-NMR study of the membrane-binding region of D-lactate dehydrogenase of Escherichia coli.

Authors:  Z Y Sun; H T Truong; E A Pratt; D C Sutherland; C E Kulig; R J Homer; S M Groetsch; P Y Hsue; C Ho
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

8.  Attractant- and disulfide-induced conformational changes in the ligand binding domain of the chemotaxis aspartate receptor: a 19F NMR study.

Authors:  M A Danielson; H P Biemann; D E Koshland; J J Falke
Journal:  Biochemistry       Date:  1994-05-24       Impact factor: 3.162

9.  The 1.9 A x-ray structure of a closed unliganded form of the periplasmic glucose/galactose receptor from Salmonella typhimurium.

Authors:  M M Flocco; S L Mowbray
Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

10.  Assignments, secondary structure, global fold, and dynamics of chemotaxis Y protein using three- and four-dimensional heteronuclear (13C,15N) NMR spectroscopy.

Authors:  F J Moy; D F Lowry; P Matsumura; F W Dahlquist; J E Krywko; P J Domaille
Journal:  Biochemistry       Date:  1994-09-06       Impact factor: 3.162

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  74 in total

1.  Biosynthesis and characterization of 4-fluorotryptophan-labeled Escherichia coli arginyl-tRNA synthetase.

Authors:  Q S Zhang; L Shen; E D Wang; Y L Wang
Journal:  J Protein Chem       Date:  1999-02

2.  Dynamic and clustering model of bacterial chemotaxis receptors: structural basis for signaling and high sensitivity.

Authors:  Sung-Hou Kim; Weiru Wang; Kyeong Kyu Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-19       Impact factor: 11.205

3.  Structural basis for the enhanced stability of highly fluorinated proteins.

Authors:  Benjamin C Buer; Jennifer L Meagher; Jeanne A Stuckey; E Neil G Marsh
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

4.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

5.  2-Fluorotyrosine is a valuable but understudied amino acid for protein-observed 19F NMR.

Authors:  Peter D Ycas; Nicole Wagner; Noelle M Olsen; Riqiang Fu; William C K Pomerantz
Journal:  J Biomol NMR       Date:  2019-11-23       Impact factor: 2.835

Review 6.  Fluorine: a new element in protein design.

Authors:  Benjamin C Buer; E Neil G Marsh
Journal:  Protein Sci       Date:  2012-02-14       Impact factor: 6.725

7.  Structural studies of Bcl-xL/ligand complexes using 19F NMR.

Authors:  Liping Yu; Philip J Hajduk; Jamey Mack; Edward T Olejniczak
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

8.  Residual interactions in unfolded bile acid-binding protein by 19F NMR.

Authors:  H Kenney Basehore; Ira J Ropson
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

9.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

10.  19F labelled glycosaminoglycan probes for solution NMR and non-linear (CARS) microscopy.

Authors:  Marcelo A Lima; Renan P Cavalheiro; Gustavo M Viana; Maria C Z Meneghetti; Timothy R Rudd; Mark A Skidmore; Andrew K Powell; Edwin A Yates
Journal:  Glycoconj J       Date:  2016-08-15       Impact factor: 2.916

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