Literature DB >> 19914248

Functional interactions by transfer RNAs in the ribosome.

Prashant Khade1, Simpson Joseph.   

Abstract

Recent X-ray crystal structures of the ribosome have revolutionized the field by providing a much-needed structural framework to understand ribosome function. Indeed, the crystal structures rationalize much of the genetic and biochemical data that have been meticulously gathered over 50 years. Here, we focus on the interactions between tRNAs and the ribosome and describe some of the insights that the structures provide about the mechanism of translation. Both high-resolution structures and functional studies are essential for fully appreciating the complex process of protein synthesis.

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Year:  2010        PMID: 19914248      PMCID: PMC2795042          DOI: 10.1016/j.febslet.2009.11.034

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  55 in total

1.  Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.

Authors:  Laura Lancaster; Harry F Noller
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

2.  The hybrid state of tRNA binding is an authentic translation elongation intermediate.

Authors:  Silke Dorner; Julie L Brunelle; Divya Sharma; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2006-02-26       Impact factor: 15.369

3.  Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.

Authors:  Luisa Cochella; Julie L Brunelle; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2006-12-10       Impact factor: 15.369

4.  Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.

Authors:  Andrei Korostelev; Sergei Trakhanov; Martin Laurberg; Harry F Noller
Journal:  Cell       Date:  2006-09-07       Impact factor: 41.582

5.  Deletion of a conserved, central ribosomal intersubunit RNA bridge.

Authors:  Iraj K Ali; Laura Lancaster; Jason Feinberg; Simpson Joseph; Harry F Noller
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

6.  A conserved base-pair between tRNA and 23 S rRNA in the peptidyl transferase center is important for peptide release.

Authors:  Jason S Feinberg; Simpson Joseph
Journal:  J Mol Biol       Date:  2006-09-20       Impact factor: 5.469

7.  Structural basis for mRNA and tRNA positioning on the ribosome.

Authors:  Veysel Berk; Wen Zhang; Raj D Pai; Jamie H D Cate; Jamie H Doudna Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-12       Impact factor: 11.205

8.  Identification of two distinct hybrid state intermediates on the ribosome.

Authors:  James B Munro; Roger B Altman; Nathan O'Connor; Scott C Blanchard
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

9.  The A-site finger in 23 S rRNA acts as a functional attenuator for translocation.

Authors:  Taeko Komoda; Neuza S Sato; Steven S Phelps; Naoki Namba; Simpson Joseph; Tsutomu Suzuki
Journal:  J Biol Chem       Date:  2006-09-01       Impact factor: 5.157

10.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

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  8 in total

Review 1.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

Review 2.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

3.  Selective desulfurization significantly expands sequence variety of 3'-peptidyl-tRNA mimics obtained by native chemical ligation.

Authors:  Anna-Skrollan Geiermann; Ronald Micura
Journal:  Chembiochem       Date:  2012-07-11       Impact factor: 3.164

4.  Structural basis for ribosome recycling by RRF and tRNA.

Authors:  Dejian Zhou; Takehito Tanzawa; Jinzhong Lin; Matthieu G Gagnon
Journal:  Nat Struct Mol Biol       Date:  2019-12-23       Impact factor: 18.361

5.  Structural insights into translational recoding by frameshift suppressor tRNASufJ.

Authors:  Crystal E Fagan; Tatsuya Maehigashi; Jack A Dunkle; Stacey J Miles; Christine M Dunham
Journal:  RNA       Date:  2014-10-28       Impact factor: 4.942

6.  Translational roles of the C75 2'OH in an in vitro tRNA transcript at the ribosomal A, P and E sites.

Authors:  Jinfan Wang; Anthony C Forster
Journal:  Sci Rep       Date:  2017-07-27       Impact factor: 4.379

7.  Circular code motifs in the ribosome: a missing link in the evolution of translation?

Authors:  Gopal Dila; Raymond Ripp; Claudine Mayer; Olivier Poch; Christian J Michel; Julie D Thompson
Journal:  RNA       Date:  2019-09-10       Impact factor: 4.942

Review 8.  Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors.

Authors:  Yoh-Ichi Watanabe; Takuma Suematsu; Takashi Ohtsuki
Journal:  Front Genet       Date:  2014-05-01       Impact factor: 4.599

  8 in total

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