Literature DB >> 16501572

The hybrid state of tRNA binding is an authentic translation elongation intermediate.

Silke Dorner1, Julie L Brunelle, Divya Sharma, Rachel Green.   

Abstract

The GTPase elongation factor (EF)-G is responsible for promoting the translocation of the messenger RNA-transfer RNA complex on the ribosome, thus opening up the A site for the next aminoacyl-tRNA. Chemical modification and cryo-EM studies have indicated that tRNAs can bind the ribosome in an alternative 'hybrid' state after peptidyl transfer and before translocation, though the relevance of this state during translation elongation has been a subject of debate. Here, using pre-steady-state kinetic approaches and mutant analysis, we show that translocation by EF-G is most efficient when tRNAs are bound in a hybrid state, supporting the argument that this state is an authentic intermediate during translation.

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Year:  2006        PMID: 16501572      PMCID: PMC1687179          DOI: 10.1038/nsmb1060

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  40 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome.

Authors:  Y P Semenkov; M V Rodnina; W Wintermeyer
Journal:  Nat Struct Biol       Date:  2000-11

3.  Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

4.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

5.  GTPase activation of elongation factors Tu and G on the ribosome.

Authors:  Dagmar Mohr; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Biochemistry       Date:  2002-10-15       Impact factor: 3.162

6.  The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity.

Authors:  Julie L Brunelle; Elaine M Youngman; Divya Sharma; Rachel Green
Journal:  RNA       Date:  2006-01       Impact factor: 4.942

7.  Base-pairing between 23S rRNA and tRNA in the ribosomal A site.

Authors:  D F Kim; R Green
Journal:  Mol Cell       Date:  1999-11       Impact factor: 17.970

8.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

9.  Conformational changes in the ribosome induced by translational miscoding agents.

Authors:  O Jerinic; S Joseph
Journal:  J Mol Biol       Date:  2000-12-15       Impact factor: 5.469

10.  Structural insights into peptide bond formation.

Authors:  Jeffrey L Hansen; T Martin Schmeing; Peter B Moore; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-16       Impact factor: 11.205

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  76 in total

1.  Insights into the molecular determinants of EF-G catalyzed translocation.

Authors:  Leyi Wang; Roger B Altman; Scott C Blanchard
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

2.  Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskiran Kaur; Zeev Smilansky; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  The complex of tmRNA-SmpB and EF-G on translocating ribosomes.

Authors:  David J F Ramrath; Hiroshi Yamamoto; Kristian Rother; Daniela Wittek; Markus Pech; Thorsten Mielke; Justus Loerke; Patrick Scheerer; Pavel Ivanov; Yoshika Teraoka; Olga Shpanchenko; Knud H Nierhaus; Christian M T Spahn
Journal:  Nature       Date:  2012-05-06       Impact factor: 49.962

4.  Single-molecule study of ribosome hierarchic dynamics at the peptidyl transferase center.

Authors:  Mediha Esra Altuntop; Cindy Tu Ly; Yuhong Wang
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

5.  Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome.

Authors:  Berthold Wilden; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-29       Impact factor: 11.205

6.  Reverse translocation of tRNA in the ribosome.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

7.  Identification of two distinct hybrid state intermediates on the ribosome.

Authors:  James B Munro; Roger B Altman; Nathan O'Connor; Scott C Blanchard
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

8.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

Review 9.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

10.  Structural basis for hygromycin B inhibition of protein biosynthesis.

Authors:  Maria A Borovinskaya; Shinichiro Shoji; Kurt Fredrick; Jamie H D Cate
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

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