Literature DB >> 31873307

Structural basis for ribosome recycling by RRF and tRNA.

Dejian Zhou1, Takehito Tanzawa2, Jinzhong Lin3, Matthieu G Gagnon4,5,6.   

Abstract

The bacterial ribosome is recycled into subunits by two conserved proteins, elongation factor G (EF-G) and the ribosome recycling factor (RRF). The molecular basis for ribosome recycling by RRF and EF-G remains unclear. Here, we report the crystal structure of a posttermination Thermus thermophilus 70S ribosome complexed with EF-G, RRF and two transfer RNAs at a resolution of 3.5 Å. The deacylated tRNA in the peptidyl (P) site moves into a previously unsuspected state of binding (peptidyl/recycling, p/R) that is analogous to that seen during initiation. The terminal end of the p/R-tRNA forms nonfavorable contacts with the 50S subunit while RRF wedges next to central inter-subunit bridges, illuminating the active roles of tRNA and RRF in dissociation of ribosomal subunits. The structure uncovers a missing snapshot of tRNA as it transits between the P and exit (E) sites, providing insights into the mechanisms of ribosome recycling and tRNA translocation.

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Year:  2019        PMID: 31873307      PMCID: PMC9150878          DOI: 10.1038/s41594-019-0350-7

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   18.361


  61 in total

1.  Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

Authors:  Andrey V Zavialov; Vasili V Hauryliuk; Måns Ehrenberg
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

2.  Structural Insights into the Role of Diphthamide on Elongation Factor 2 in mRNA Reading-Frame Maintenance.

Authors:  Simone Pellegrino; Natalia Demeshkina; Eder Mancera-Martinez; Sergey Melnikov; Angelita Simonetti; Alexander Myasnikov; Marat Yusupov; Gulnara Yusupova; Yaser Hashem
Journal:  J Mol Biol       Date:  2018-06-07       Impact factor: 5.469

3.  Structure of the 30S translation initiation complex.

Authors:  Angelita Simonetti; Stefano Marzi; Alexander G Myasnikov; Attilio Fabbretti; Marat Yusupov; Claudio O Gualerzi; Bruno P Klaholz
Journal:  Nature       Date:  2008-08-31       Impact factor: 49.962

4.  The cryo-EM structure of a translation initiation complex from Escherichia coli.

Authors:  Gregory S Allen; Andrey Zavialov; Richard Gursky; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

5.  Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling.

Authors:  Samuel H Sternberg; Jingyi Fei; Noam Prywes; Kelly A McGrath; Ruben L Gonzalez
Journal:  Nat Struct Mol Biol       Date:  2009-07-13       Impact factor: 15.369

6.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

7.  Control of ribosomal subunit rotation by elongation factor G.

Authors:  Arto Pulk; Jamie H D Cate
Journal:  Science       Date:  2013-06-28       Impact factor: 47.728

8.  Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy.

Authors:  Ziao Fu; Sandip Kaledhonkar; Anneli Borg; Ming Sun; Bo Chen; Robert A Grassucci; Måns Ehrenberg; Joachim Frank
Journal:  Structure       Date:  2016-11-03       Impact factor: 5.006

9.  Conformational changes of elongation factor G on the ribosome during tRNA translocation.

Authors:  Jinzhong Lin; Matthieu G Gagnon; David Bulkley; Thomas A Steitz
Journal:  Cell       Date:  2015-01-15       Impact factor: 41.582

10.  Structural insights into unique features of the human mitochondrial ribosome recycling.

Authors:  Ravi K Koripella; Manjuli R Sharma; Paul Risteff; Pooja Keshavan; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-08       Impact factor: 11.205

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  8 in total

Review 1.  The expanding world of tRNA modifications and their disease relevance.

Authors:  Tsutomu Suzuki
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-03       Impact factor: 94.444

Review 2.  Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors.

Authors:  Franziska Nadler; Elena Lavdovskaia; Ricarda Richter-Dennerlein
Journal:  RNA Biol       Date:  2021-12-31       Impact factor: 4.652

Review 3.  Mechanisms of ribosome recycling in bacteria and mitochondria: a structural perspective.

Authors:  Savannah M Seely; Matthieu G Gagnon
Journal:  RNA Biol       Date:  2021-12-31       Impact factor: 4.766

4.  Neuron-specific translational control shift ensures proteostatic resilience during ER stress.

Authors:  Kimberly Wolzak; Anna Nölle; Margherita Farina; Truus Em Abbink; Marjo S van der Knaap; Matthijs Verhage; Wiep Scheper
Journal:  EMBO J       Date:  2022-07-06       Impact factor: 14.012

5.  Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling.

Authors:  Hauke S Hillen; Elena Lavdovskaia; Franziska Nadler; Elisa Hanitsch; Andreas Linden; Katherine E Bohnsack; Henning Urlaub; Ricarda Richter-Dennerlein
Journal:  Nat Commun       Date:  2021-06-16       Impact factor: 14.919

6.  Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance.

Authors:  Ravi Kiran Koripella; Ayush Deep; Ekansh K Agrawal; Pooja Keshavan; Nilesh K Banavali; Rajendra K Agrawal
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

7.  The hibernating 100S complex is a target of ribosome-recycling factor and elongation factor G in Staphylococcus aureus.

Authors:  Arnab Basu; Kathryn E Shields; Mee-Ngan F Yap
Journal:  J Biol Chem       Date:  2020-03-24       Impact factor: 5.157

8.  Cryo-electron microscopy visualization of a large insertion in the 5S ribosomal RNA of the extremely halophilic archaeon Halococcus morrhuae.

Authors:  Madhan R Tirumalai; Jason T Kaelber; Donghyun R Park; Quyen Tran; George E Fox
Journal:  FEBS Open Bio       Date:  2020-09-17       Impact factor: 2.792

  8 in total

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