Literature DB >> 16962654

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.

Andrei Korostelev1, Sergei Trakhanov, Martin Laurberg, Harry F Noller.   

Abstract

Our understanding of the mechanism of protein synthesis has undergone rapid progress in recent years as a result of low-resolution X-ray and cryo-EM structures of ribosome functional complexes and high-resolution structures of ribosomal subunits and vacant ribosomes. Here, we present the crystal structure of the Thermus thermophilus 70S ribosome containing a model mRNA and two tRNAs at 3.7 A resolution. Many structural details of the interactions between the ribosome, tRNA, and mRNA in the P and E sites and the ways in which tRNA structure is distorted by its interactions with the ribosome are seen. Differences between the conformations of vacant and tRNA-bound 70S ribosomes suggest an induced fit of the ribosome structure in response to tRNA binding, including significant changes in the peptidyl-transferase catalytic site.

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Year:  2006        PMID: 16962654     DOI: 10.1016/j.cell.2006.08.032

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  245 in total

1.  tRNAs marked with CCACCA are targeted for degradation.

Authors:  Jeremy E Wilusz; Joseph M Whipple; Eric M Phizicky; Phillip A Sharp
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

2.  Insights into the molecular determinants of EF-G catalyzed translocation.

Authors:  Leyi Wang; Roger B Altman; Scott C Blanchard
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

3.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

4.  Excited states of ribosome translocation revealed through integrative molecular modeling.

Authors:  Paul C Whitford; Aqeel Ahmed; Yanan Yu; Scott P Hennelly; Florence Tama; Christian M T Spahn; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-11       Impact factor: 11.205

5.  A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli.

Authors:  Jacqueline Giliberti; Sean O'Donnell; William J Van Etten; Gary R Janssen
Journal:  RNA       Date:  2012-01-30       Impact factor: 4.942

6.  Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy.

Authors:  Niels Fischer; Andrey L Konevega; Wolfgang Wintermeyer; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

7.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

Authors:  Lasse B Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

8.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

Review 9.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

Review 10.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

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