Literature DB >> 19850372

On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs.

Fang Xu1, Wei Xu, Mel Jones, Bettina Keszthelyi, John Sedat, David Agard, Klaus Mueller.   

Abstract

Expectation Maximization (EM) and the Simultaneous Iterative Reconstruction Technique (SIRT) are two iterative computed tomography reconstruction algorithms often used when the data contain a high amount of statistical noise, have been acquired from a limited angular range, or have a limited number of views. A popular mechanism to increase the rate of convergence of these types of algorithms has been to perform the correctional updates within subsets of the projection data. This has given rise to the method of Ordered Subsets EM (OS-EM) and the Simultaneous Algebraic Reconstruction Technique (SART). Commodity graphics hardware (GPUs) has shown great promise to combat the high computational demands incurred by iterative reconstruction algorithms. However, we find that the special architecture and programming model of GPUs add extra constraints on the real-time performance of ordered subsets algorithms, counteracting the speedup benefits of smaller subsets observed on CPUs. This gives rise to new relationships governing the optimal number of subsets as well as relaxation factor settings for obtaining the smallest wall-clock time for reconstruction-a factor that is likely application-dependent. In this paper we study the generalization of SIRT into Ordered Subsets SIRT and show that this allows one to optimize the computational performance of GPU-accelerated iterative algebraic reconstruction methods. Copyright 2009 Elsevier Ireland Ltd. All rights reserved.

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Year:  2009        PMID: 19850372      PMCID: PMC2871068          DOI: 10.1016/j.cmpb.2009.09.003

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  11 in total

1.  Unmatched projector/backprojector pairs in an iterative reconstruction algorithm.

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Journal:  IEEE Trans Med Imaging       Date:  2000-05       Impact factor: 10.048

2.  Evaluation of accelerated iterative x-ray CT image reconstruction using floating point graphics hardware.

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Journal:  Phys Med Biol       Date:  2006-01-25       Impact factor: 3.609

3.  Real-time 3D computed tomographic reconstruction using commodity graphics hardware.

Authors:  Fang Xu; Klaus Mueller
Journal:  Phys Med Biol       Date:  2007-05-17       Impact factor: 3.609

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Journal:  IEEE Trans Med Imaging       Date:  1994       Impact factor: 10.048

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Journal:  IEEE Trans Med Imaging       Date:  1982       Impact factor: 10.048

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Journal:  IEEE Trans Med Imaging       Date:  1989       Impact factor: 10.048

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Authors:  P Gilbert
Journal:  J Theor Biol       Date:  1972-07       Impact factor: 2.691

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Journal:  J Theor Biol       Date:  1970-12       Impact factor: 2.691

9.  Simultaneous algebraic reconstruction technique (SART): a superior implementation of the art algorithm.

Authors:  A H Andersen; A C Kak
Journal:  Ultrason Imaging       Date:  1984-01       Impact factor: 1.578

10.  On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs.

Authors:  Fang Xu; Wei Xu; Mel Jones; Bettina Keszthelyi; John Sedat; David Agard; Klaus Mueller
Journal:  Comput Methods Programs Biomed       Date:  2009-10-21       Impact factor: 5.428

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  9 in total

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Authors:  J Dong; Y Hayakawa; C Kober
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Review 3.  GPU-based high-performance computing for radiation therapy.

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Journal:  Phys Med Biol       Date:  2014-02-03       Impact factor: 3.609

4.  A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction.

Authors:  Shawn Q Zheng; Eric Branlund; Bettina Kesthelyi; Michael B Braunfeld; Yifan Cheng; John W Sedat; David A Agard
Journal:  Ultramicroscopy       Date:  2011-04-01       Impact factor: 2.689

5.  On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs.

Authors:  Fang Xu; Wei Xu; Mel Jones; Bettina Keszthelyi; John Sedat; David Agard; Klaus Mueller
Journal:  Comput Methods Programs Biomed       Date:  2009-10-21       Impact factor: 5.428

6.  GPU-based Branchless Distance-Driven Projection and Backprojection.

Authors:  Rui Liu; Lin Fu; Bruno De Man; Hengyong Yu
Journal:  IEEE Trans Comput Imaging       Date:  2017-02-28

7.  High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (GPUs).

Authors:  Wei Xu; Fang Xu; Mel Jones; Bettina Keszthelyi; John Sedat; David Agard; Klaus Mueller
Journal:  J Struct Biol       Date:  2010-04-04       Impact factor: 2.867

8.  3D alternating direction TV-based cone-beam CT reconstruction with efficient GPU implementation.

Authors:  Ailong Cai; Linyuan Wang; Hanming Zhang; Bin Yan; Lei Li; Xiaoqi Xi; Min Guan; Jianxin Li
Journal:  Comput Math Methods Med       Date:  2014-06-19       Impact factor: 2.238

9.  Evaluation of algebraic iterative image reconstruction methods for tetrahedron beam computed tomography systems.

Authors:  Joshua Kim; Huaiqun Guan; David Gersten; Tiezhi Zhang
Journal:  Int J Biomed Imaging       Date:  2013-05-27
  9 in total

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