Literature DB >> 19845327

Water in the half shell: structure of water, focusing on angular structure and solvation.

Kim A Sharp1, Jane M Vanderkooi.   

Abstract

Water is a highly polar molecule, consisting of a very electronegative atom, oxygen, bonded to two weakly electropositive hydrogen atoms with two lone pairs of electrons. These features give water remarkable physical properties, some of which are anomalous, such as its lower density in the solid phase compared with the liquid phase. Its ability to serve as both a hydrogen bond donor and hydrogen bond acceptor governs its role as a solvent, a role that is of central interest for biological chemists. In this Account, we focus on water's properties as a solvent. Water dissolves a vast range of solutes with solubilities that range over 10 orders of magnitude. Differences in solubility define the fundamental dichotomy between polar, or hydrophilic, solutes and apolar, or hydrophobic, solutes. This important distinction plays a large part in the structure, stability, and function of biological macromolecules. The strength of hydrogen bonding depends on the H-O...O H-bond angle, and the angular distribution is bimodal. Changes in the width and frequency of infrared spectral lines and in the heat capacity of the solution provide a measure of the changes in the strength and distribution of angles of the hydrogen bonds. Polar solutes and inorganic ions increase the population of bent hydrogen bonds at the expense of the more linear population, while apolar solutes or groups have the opposite effect. We examine how protein denaturants might alter the solvation behavior of water. Urea has very little effect on water's hydrogen bond network, while guanidinium ions promote more linear hydrogen bonds. These results point to fundamental differences in the protein denaturation mechanisms of these molecules. We also suggest a mechanism of action for antifreeze (or thermal hysteresis) proteins: ordering of water around the surface of these proteins prior to freezing appears to interfere with ice formation.

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Year:  2010        PMID: 19845327      PMCID: PMC2824014          DOI: 10.1021/ar900154j

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  29 in total

1.  Relationship between structural order and the anomalies of liquid water.

Authors:  J R Errington; P G Debenedetti
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

2.  Structures of high-density and low-density water

Authors: 
Journal:  Phys Rev Lett       Date:  2000-03-27       Impact factor: 9.161

3.  The mechanism of the type III antifreeze protein action: a computational study.

Authors:  Cheng Yang; Kim A Sharp
Journal:  Biophys Chem       Date:  2004-04-01       Impact factor: 2.352

4.  Unified description of temperature-dependent hydrogen-bond rearrangements in liquid water.

Authors:  Jared D Smith; Christopher D Cappa; Kevin R Wilson; Ronald C Cohen; Phillip L Geissler; Richard J Saykally
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-22       Impact factor: 11.205

5.  Analysis of thermal hysteresis protein hydration using the random network model.

Authors:  Kelly Ryan Gallagher; Kim A Sharp
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

6.  Effects of Salts of the Hofmeister Series on the Hydrogen Bond Network of Water.

Authors:  Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Mol Liq       Date:  2008-10-20       Impact factor: 6.165

7.  Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures.

Authors:  Jennifer L Dashnau; Nathaniel V Nucci; Kim A Sharp; Jane M Vanderkooi
Journal:  J Phys Chem B       Date:  2006-07-13       Impact factor: 2.991

8.  Hydration heat capacity of nucleic acid constituents determined from the random network model.

Authors:  B Madan; K A Sharp
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

9.  Charge density-dependent strength of hydration and biological structure.

Authors:  K D Collins
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

10.  The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.

Authors:  Scott T R Walsh; Richard P Cheng; Wayne W Wright; Darwin O V Alonso; Valerie Daggett; Jane M Vanderkooi; William F DeGrado
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

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  20 in total

1.  Thermal stability of glucokinase (GK) as influenced by the substrate glucose, an allosteric glucokinase activator drug (GKA) and the osmolytes glycerol and urea.

Authors:  B Zelent; C Buettger; J Grimsby; R Sarabu; J M Vanderkooi; A J Wand; F M Matschinsky
Journal:  Biochim Biophys Acta       Date:  2012-03-16

2.  Site-specific hydration dynamics of globular proteins and the role of constrained water in solvent exchange with amphiphilic cosolvents.

Authors:  John T King; Evan J Arthur; Charles L Brooks; Kevin J Kubarych
Journal:  J Phys Chem B       Date:  2012-05-07       Impact factor: 2.991

3.  Enthalpic Breakdown of Water Structure on Protein Active-Site Surfaces.

Authors:  Kamran Haider; Lauren Wickstrom; Steven Ramsey; Michael K Gilson; Tom Kurtzman
Journal:  J Phys Chem B       Date:  2016-06-02       Impact factor: 2.991

4.  Characterizing key features in the formation of ice and gas hydrate systems.

Authors:  Shuai Liang; Kyle Wm Hall; Aatto Laaksonen; Zhengcai Zhang; Peter G Kusalik
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-06-03       Impact factor: 4.226

5.  Synthesis and Protein Incorporation of Azido-Modified Unnatural Amino Acids.

Authors:  Elise M Tookmanian; Edward E Fenlon; Scott H Brewer
Journal:  RSC Adv       Date:  2014-12-02       Impact factor: 3.361

6.  Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?

Authors:  Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

7.  Evidence of a structural defect in Ice VII and the side-chain-dependent response of small model peptides to increased pressure.

Authors:  J Nathan Scott; Jane M Vanderkooi
Journal:  Appl Spectrosc       Date:  2011-07       Impact factor: 2.388

8.  Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability.

Authors:  Ileana M Pazos; Feng Gai
Journal:  J Phys Chem B       Date:  2012-10-09       Impact factor: 2.991

9.  Temperature dependence of water interactions with the amide carbonyls of α-helices.

Authors:  Scott H Brewer; Yuefeng Tang; Dung M Vu; S Gnanakaran; Daniel P Raleigh; R Brian Dyer
Journal:  Biochemistry       Date:  2012-06-18       Impact factor: 3.162

10.  Solvation Structure and Thermodynamic Mapping (SSTMap): An Open-Source, Flexible Package for the Analysis of Water in Molecular Dynamics Trajectories.

Authors:  Kamran Haider; Anthony Cruz; Steven Ramsey; Michael K Gilson; Tom Kurtzman
Journal:  J Chem Theory Comput       Date:  2017-12-08       Impact factor: 6.006

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