Literature DB >> 22998405

Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability.

Ileana M Pazos1, Feng Gai.   

Abstract

While the thermodynamic effects of trimethylamine oxide (TMAO), urea, and guanidine hydrochloride (GdnHCl) on protein stability are well understood, the underlying mechanisms of action are less well characterized and, in some cases, even under debate. Herein, we employ the stretching vibration of two infrared (IR) reporters, i.e., nitrile (C≡N) and carbonyl (C═O), to directly probe how these cosolvents mediate the ability of water to form hydrogen bonds with the solute of interest, e.g., a peptide. Our results show that these three agents, despite having different effects on protein stability, all act to decrease the strength of the hydrogen bonds formed between water and the infrared probe. While the behavior of TMAO appears to be consistent with its protein-protecting ability, those of urea and GdnHCl are inconsistent with their role as protein denaturants. The latter is of particular interest as it provides strong evidence indicating that although urea and GdnHCl can perturb the hydrogen-bonding property of water their protein-denaturing ability does not arise from a simple indirect mechanism.

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Year:  2012        PMID: 22998405      PMCID: PMC3475735          DOI: 10.1021/jp307414s

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  83 in total

1.  Coherent microscopic picture for urea-induced denaturation of proteins.

Authors:  Zaixing Yang; Peng Xiu; Biyun Shi; Lan Hua; Ruhong Zhou
Journal:  J Phys Chem B       Date:  2012-07-24       Impact factor: 2.991

2.  The hydrogen bond network structure within the hydration shell around simple osmolytes: urea, tetramethylurea, and trimethylamine-N-oxide, investigated using both a fixed charge and a polarizable water model.

Authors:  Anna Kuffel; Jan Zielkiewicz
Journal:  J Chem Phys       Date:  2010-07-21       Impact factor: 3.488

3.  Anatomy of energetic changes accompanying urea-induced protein denaturation.

Authors:  Matthew Auton; Luis Marcelo F Holthauzen; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

4.  Interpretation of p-cyanophenylalanine fluorescence in proteins in terms of solvent exposure and contribution of side-chain quenchers: a combined fluorescence, IR and molecular dynamics study.

Authors:  Humeyra Taskent-Sezgin; Juah Chung; Vadim Patsalo; Shigeki J Miyake-Stoner; Andrew M Miller; Scott H Brewer; Ryan A Mehl; David F Green; Daniel P Raleigh; Isaac Carrico
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

5.  Cyano groups as probes of protein microenvironments and dynamics.

Authors:  Jörg Zimmermann; Megan C Thielges; Young Jun Seo; Philip E Dawson; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2011-07-20       Impact factor: 15.336

6.  Computational Modeling of the Nitrile Stretching Vibration of 5-Cyanoindole in Water.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Phys Chem Lett       Date:  2010-02-01       Impact factor: 6.475

7.  A direct comparison of azide and nitrile vibrational probes.

Authors:  Xin Sonia Gai; Basil A Coutifaris; Scott H Brewer; Edward E Fenlon
Journal:  Phys Chem Chem Phys       Date:  2011-02-18       Impact factor: 3.676

8.  Residue-specific, real-time characterization of lag-phase species and fibril growth during amyloid formation: a combined fluorescence and IR study of p-cyanophenylalanine analogs of islet amyloid polypeptide.

Authors:  Peter Marek; Sudipta Mukherjee; Martin T Zanni; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2010-06-01       Impact factor: 5.469

9.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

10.  Effects of urea and trimethylamine-N-oxide on the properties of water and the secondary structure of hen egg white lysozyme.

Authors:  Aneta Panuszko; Piotr Bruździak; Jan Zielkiewicz; Dariusz Wyrzykowski; Janusz Stangret
Journal:  J Phys Chem B       Date:  2009-11-05       Impact factor: 2.991

View more
  10 in total

Review 1.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

2.  Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?

Authors:  Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

3.  Effect of Osmolytes on Conformational Behavior of Intrinsically Disordered Protein α-Synuclein.

Authors:  Ishrat Jahan; Shahid M Nayeem
Journal:  Biophys J       Date:  2019-10-22       Impact factor: 4.033

4.  Regulation and aggregation of intrinsically disordered peptides.

Authors:  Zachary A Levine; Luca Larini; Nichole E LaPointe; Stuart C Feinstein; Joan-Emma Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

5.  Trimethylamine N-oxide stabilizes proteins via a distinct mechanism compared with betaine and glycine.

Authors:  Yi-Ting Liao; Anthony C Manson; Michael R DeLyser; William G Noid; Paul S Cremer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-22       Impact factor: 11.205

6.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

7.  Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO).

Authors:  Jianqiang Ma; Ileana M Pazos; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

8.  Structure and dynamics of urea/water mixtures investigated by vibrational spectroscopy and molecular dynamics simulation.

Authors:  J K Carr; L E Buchanan; J R Schmidt; M T Zanni; J L Skinner
Journal:  J Phys Chem B       Date:  2013-07-25       Impact factor: 2.991

9.  2D IR spectroscopy of histidine: probing side-chain structure and dynamics via backbone amide vibrations.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  J Phys Chem B       Date:  2014-04-18       Impact factor: 2.991

10.  Protein Denaturation with Guanidinium: A 2D-IR Study.

Authors:  Adriana Huerta-Viga; Sander Woutersen
Journal:  J Phys Chem Lett       Date:  2013-09-23       Impact factor: 6.475

  10 in total

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