Literature DB >> 22530969

Site-specific hydration dynamics of globular proteins and the role of constrained water in solvent exchange with amphiphilic cosolvents.

John T King1, Evan J Arthur, Charles L Brooks, Kevin J Kubarych.   

Abstract

The thermodynamic driving forces for protein folding, association, and function are often determined by protein-water interactions. With a novel covalently bound labeling approach, we have used sensitive vibrational probes, site-selectively conjugated to two lysozyme variants-in conjunction with ultrafast two-dimensional infrared (2D-IR) spectroscopy-to investigate directly the protein-water interface. By probing alternatively a topologically flat, rigid domain and a flexible domain, we find direct experimental evidence for spatially heterogeneous hydration dynamics. The hydration environment around globular proteins can vary from exhibiting bulk-like hydration dynamics to dynamically constrained water, which results from stifled hydrogen bond switching dynamics near extended hydrophobic surfaces. Furthermore, we leverage preferential solvation exchange to demonstrate that the liberation of dynamically constrained water is a sufficient driving force for protein-surface association reactions. These results provide an intuitive picture of the dynamic aspects of hydrophobic hydration of proteins, illustrating an essential function of water in biological processes.

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Year:  2012        PMID: 22530969      PMCID: PMC3422398          DOI: 10.1021/jp300835k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  57 in total

1.  Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  Large angular jump mechanism observed for hydrogen bond exchange in aqueous perchlorate solution.

Authors:  Minbiao Ji; Michael Odelius; K J Gaffney
Journal:  Science       Date:  2010-05-21       Impact factor: 47.728

3.  The effects of dissolved halide anions on hydrogen bonding in liquid water.

Authors:  Jared D Smith; Richard J Saykally; Phillip L Geissler
Journal:  J Am Chem Soc       Date:  2007-10-25       Impact factor: 15.419

4.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

5.  Mapping hydration dynamics around a protein surface.

Authors:  Luyuan Zhang; Lijuan Wang; Ya-Ting Kao; Weihong Qiu; Yi Yang; Oghaghare Okobiah; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

6.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

7.  Hydrogen bonds in liquid water are broken only fleetingly.

Authors:  J D Eaves; J J Loparo; C J Fecko; S T Roberts; A Tokmakoff; P L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-31       Impact factor: 11.205

8.  Thermodynamics of protein association reactions: forces contributing to stability.

Authors:  P D Ross; S Subramanian
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

9.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

10.  Ion-water hydrogen-bond switching observed with 2D IR vibrational echo chemical exchange spectroscopy.

Authors:  David E Moilanen; Daryl Wong; Daniel E Rosenfeld; Emily E Fenn; M D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-23       Impact factor: 11.205

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  23 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

Review 2.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 4.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

5.  Transparent window 2D IR spectroscopy of proteins.

Authors:  Megan C Thielges
Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

6.  Capturing the photo-signaling state of a photoreceptor in a steady-state fashion by binding a transition metal complex.

Authors:  Pengyun Yu; Lei Song; Jun Qin; Jianping Wang
Journal:  Protein Sci       Date:  2017-09-30       Impact factor: 6.725

7.  Mechanical Unfolding of Spectrin Repeats Induces Water-Molecule Ordering.

Authors:  Sarah J Moe; Alessandro Cembran
Journal:  Biophys J       Date:  2020-01-16       Impact factor: 4.033

8.  Spatially Heterogeneous Surface Water Diffusivity around Structured Protein Surfaces at Equilibrium.

Authors:  Ryan Barnes; Sheng Sun; Yann Fichou; Frederick W Dahlquist; Matthias Heyden; Songi Han
Journal:  J Am Chem Soc       Date:  2017-11-27       Impact factor: 15.419

9.  A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies.

Authors:  Ann Marie Woys; Sudipta S Mukherjee; David R Skoff; Sean D Moran; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-04-15       Impact factor: 2.991

Review 10.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

Authors:  A Joshua Wand
Journal:  Curr Opin Struct Biol       Date:  2012-12-13       Impact factor: 6.809

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