Literature DB >> 21740637

Evidence of a structural defect in Ice VII and the side-chain-dependent response of small model peptides to increased pressure.

J Nathan Scott1, Jane M Vanderkooi.   

Abstract

The effect of high pressure on the OH stretch of dilute HOD in D(2)O was examined using high-pressure Fourier transform infrared (FT-IR) spectroscopy. It was found that at pressures directly above the ice VI to ice VII transition, ice VII displays a splitting in the OH absorption indicative of differing hydrogen bonding environments. This result is contrary to published structures of ice VII in which each OH oscillator should experience an identical electronic environment. The anomalous band was found to decrease in absorbance and finally disappear at ∼43.0 kbar. In addition, the pressure response of the amide I' and II' bands of three small model peptides was examined. Analysis of these bands' response to increased pressure indicates significant side-chain dependence of their structural rearrangement, which may play a role in the composition of full length proteins of barophilic organisms.

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Year:  2011        PMID: 21740637      PMCID: PMC4272451          DOI: 10.1366/10-06044

Source DB:  PubMed          Journal:  Appl Spectrosc        ISSN: 0003-7028            Impact factor:   2.388


  17 in total

1.  Pressure activation of the chaperone function of small heat shock proteins.

Authors:  E Tölgyesi; C S Böde; L Smelleri; D R Kim; K K Kim; K Heremans; J Fidy
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  2004-06       Impact factor: 1.770

2.  Side chain dependence of intensity and wavenumber position of amide I' in IR and visible Raman spectra of XA and AX dipeptides.

Authors:  Thomas Measey; Andrew Hagarman; Fatma Eker; Kai Griebenow; Reinhard Schweitzer-Stenner
Journal:  J Phys Chem B       Date:  2005-04-28       Impact factor: 2.991

3.  Single particle and collective hydration dynamics for hydrophobic and hydrophilic peptides.

Authors:  Rajesh K Murarka; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2007-06-07       Impact factor: 3.488

4.  Site disorder in ice VII arising from hydrogen bond fluctuations.

Authors:  Chris Knight; Sherwin J Singer
Journal:  J Phys Chem A       Date:  2009-11-12       Impact factor: 2.781

5.  Enzymatic profiles of 11 barophilic bacteria under in situ conditions: evidence for pressure modulation of phenotype.

Authors:  W L Straube; M O'Brien; K Davis; R R Colwell
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

6.  Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures.

Authors:  Jennifer L Dashnau; Nathaniel V Nucci; Kim A Sharp; Jane M Vanderkooi
Journal:  J Phys Chem B       Date:  2006-07-13       Impact factor: 2.991

7.  Pressure-tuning the conformation of bovine pancreatic trypsin inhibitor studied by Fourier-transform infrared spectroscopy.

Authors:  K Goossens; L Smeller; J Frank; K Heremans
Journal:  Eur J Biochem       Date:  1996-02-15

8.  Temperature dependence of hydrogen bonding and freezing behavior of water in reverse micelles.

Authors:  Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Phys Chem B       Date:  2005-10-06       Impact factor: 2.991

9.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

10.  Structure of Ice VI.

Authors:  B Kamb
Journal:  Science       Date:  1965-10-08       Impact factor: 47.728

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  1 in total

1.  Amino acid side chain contribution to protein FTIR spectra: impact on secondary structure evaluation.

Authors:  Joëlle De Meutter; Erik Goormaghtigh
Journal:  Eur Biophys J       Date:  2021-02-08       Impact factor: 1.733

  1 in total

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