Literature DB >> 22680405

Temperature dependence of water interactions with the amide carbonyls of α-helices.

Scott H Brewer1, Yuefeng Tang, Dung M Vu, S Gnanakaran, Daniel P Raleigh, R Brian Dyer.   

Abstract

Hydration is a key determinant of the folding, dynamics, and function of proteins. In this study, temperature-dependent Fourier transform infrared (FTIR) spectroscopy combined with singular value decomposition (SVD) and global fitting were used to investigate both the interaction of water with α-helical proteins and the cooperative thermal unfolding of these proteins. This methodology has been applied to an isolated α-helix (Fs peptide) and to globular α-helical proteins including the helical subdomain and full-length villin headpiece (HP36 and HP67). The results suggest a unique IR signature for the interaction of water with the helical amide carbonyl groups of the peptide backbone. The IR spectra indicate a weakening of the net hydrogen bond strength of water to the backbone carbonyls with increasing temperature. This weakening of the backbone solvation occurs as a discrete transition near the maximum of the temperature-dependent hydrophobic effect, not a continuous change with increasing temperature. Possible molecular origins of this effect are discussed with respect to previous molecular dynamics simulations of the temperature-dependent solvation of the helix backbone.

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Year:  2012        PMID: 22680405      PMCID: PMC3448027          DOI: 10.1021/bi3006434

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

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Authors:  Minghui Wang; Yuefeng Tang; Satoshi Sato; Liliya Vugmeyster; C James McKnight; Daniel P Raleigh
Journal:  J Am Chem Soc       Date:  2003-05-21       Impact factor: 15.419

2.  Nature of structural inhomogeneities on folding a helix and their influence on spectral measurements.

Authors:  S Gnanakaran; Robin M Hochstrasser; Angel E García
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-14       Impact factor: 11.205

3.  Nature of vibrational coupling in helical peptides: an isotopic labeling study.

Authors:  Rong Huang; Jan Kubelka; Wendy Barber-Armstrong; R A G D Silva; Sean M Decatur; Timothy A Keiderling
Journal:  J Am Chem Soc       Date:  2004-03-03       Impact factor: 15.419

4.  Protein folded states are kinetic hubs.

Authors:  Gregory R Bowman; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

5.  Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.

Authors:  David R Turner; Jan Kubelka
Journal:  J Phys Chem B       Date:  2007-01-26       Impact factor: 2.991

6.  Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece.

Authors:  Daniel L Ensign; Peter M Kasson; Vijay S Pande
Journal:  J Mol Biol       Date:  2007-09-29       Impact factor: 5.469

7.  Hydration of an alpha-helical peptide: comparison of theory and molecular dynamics simulation.

Authors:  A E García; G Hummer; D M Soumpasis
Journal:  Proteins       Date:  1997-04

8.  The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.

Authors:  Scott T R Walsh; Richard P Cheng; Wayne W Wright; Darwin O V Alonso; Valerie Daggett; Jane M Vanderkooi; William F DeGrado
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

9.  Ab initio quantum mechanical models of peptide helices and their vibrational spectra.

Authors:  Petr Bour; Jan Kubelka; Timothy A Keiderling
Journal:  Biopolymers       Date:  2002-10-05       Impact factor: 2.505

10.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

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  8 in total

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2.  Heterogeneity in the Folding of Villin Headpiece Subdomain HP36.

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Journal:  J Phys Chem B       Date:  2018-08-28       Impact factor: 2.991

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4.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

5.  Submillisecond Dynamics of Mastoparan X Insertion into Lipid Membranes.

Authors:  Erin E Schuler; Sureshbabu Nagarajan; R Brian Dyer
Journal:  J Phys Chem Lett       Date:  2016-08-15       Impact factor: 6.475

6.  Deducing conformational variability of intrinsically disordered proteins from infrared spectroscopy with Bayesian statistics.

Authors:  Anurag Sethi; Divina Anunciado; Jianhui Tian; Dung M Vu; S Gnanakaran
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

7.  Influence of Membrane-Fusogen Distance on the Secondary Structure of Fusogenic Coiled Coil Peptides.

Authors:  Geert A Daudey; Christian Schwieger; Martin Rabe; Alexander Kros
Journal:  Langmuir       Date:  2019-04-10       Impact factor: 3.882

8.  High Throughput Proteomic Exploration of Hypothermic Preservation Reveals Active Processes within the Cell Associated with Cold Ischemia Kinetic.

Authors:  Ophélie Pasini-Chabot; Julia Vincent; Sylvain Le Pape; Maryne Lepoittevin; Wassim Kaaki; Jean-Baptiste Woillard; Sebastien Giraud; Nicolas Bourmeyster; Thierry Hauet; Raphael Thuillier
Journal:  Int J Mol Sci       Date:  2021-02-27       Impact factor: 5.923

  8 in total

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