Literature DB >> 19792463

Quantized ionic conductance in nanopores.

Michael Zwolak1, Johan Lagerqvist, Massimiliano Di Ventra.   

Abstract

Ionic transport in nanopores is a fundamentally and technologically important problem in view of its occurrence in biological processes and its impact on novel DNA sequencing applications. Using molecular dynamics simulations we show that ion transport may exhibit strong nonlinearities as a function of the pore radius reminiscent of the conductance quantization steps as a function of the transverse cross section of quantum point contacts. In the present case, however, conductance steps originate from the break up of the hydration layers that form around ions in aqueous solution. We discuss this phenomenon and the conditions under which it should be experimentally observable.

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Year:  2009        PMID: 19792463      PMCID: PMC2989414          DOI: 10.1103/PhysRevLett.103.128102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  28 in total

1.  Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel.

Authors:  W Vercoutere; S Winters-Hilt; H Olsen; D Deamer; D Haussler; M Akeson
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

2.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

Review 3.  Characterization of nucleic acids by nanopore analysis.

Authors:  David W Deamer; Daniel Branton
Journal:  Acc Chem Res       Date:  2002-10       Impact factor: 22.384

4.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

5.  Conductance of ion channels and nanopores with charged walls: a toy model.

Authors:  J Zhang; A Kamenev; B I Shklovskii
Journal:  Phys Rev Lett       Date:  2005-09-26       Impact factor: 9.161

6.  Comment on "Characterization of the tunneling conductance across DNA bases".

Authors:  Johan Lagerqvist; Michael Zwolak; Massimiliano Di Ventra
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-07-09

7.  Hydration properties of magnesium and calcium ions from constrained first principles molecular dynamics.

Authors:  Takashi Ikeda; Mauro Boero; Kiyoyuki Terakura
Journal:  J Chem Phys       Date:  2007-08-21       Impact factor: 3.488

8.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

9.  Ion solvation in water from molecular dynamics simulation with the ABEEM/MM force field.

Authors:  Zhong-Zhi Yang; Xin Li
Journal:  J Phys Chem A       Date:  2005-04-28       Impact factor: 2.781

10.  Structure and dynamics of the hydration shells of the Al3+ ion.

Authors:  Eric J Bylaska; Marat Valiev; James R Rustad; John H Weare
Journal:  J Chem Phys       Date:  2007-03-14       Impact factor: 3.488

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  19 in total

Review 1.  Decoding DNA, RNA and peptides with quantum tunnelling.

Authors:  Massimiliano Di Ventra; Masateru Taniguchi
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

2.  Molecule-hugging graphene nanopores.

Authors:  Slaven Garaj; Song Liu; Jene A Golovchenko; Daniel Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

3.  Maxwell-Hall access resistance in graphene nanopores.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Phys Chem Chem Phys       Date:  2018-02-14       Impact factor: 3.676

4.  Golden aspect ratio for ion transport simulation in nanopores.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Phys Rev E       Date:  2018-07       Impact factor: 2.529

5.  Electro-Mechanical Conductance Modulation of a Nanopore Using a Removable Gate.

Authors:  Shidi Zhao; Laura Restrepo-Pérez; Misha Soskine; Giovanni Maglia; Chirlmin Joo; Cees Dekker; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2019-02-08       Impact factor: 15.881

6.  Observation of ionic Coulomb blockade in nanopores.

Authors:  Jiandong Feng; Ke Liu; Michael Graf; Dumitru Dumcenco; Andras Kis; Massimiliano Di Ventra; Aleksandra Radenovic
Journal:  Nat Mater       Date:  2016-03-28       Impact factor: 43.841

7.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

8.  Drastically Reduced Ion Mobility in a Nanopore Due to Enhanced Pairing and Collisions between Dehydrated Ions.

Authors:  Jian Ma; Kun Li; Zhongwu Li; Yinghua Qiu; Wei Si; Yanyan Ge; Jingjie Sha; Lei Liu; Xiao Xie; Hong Yi; Zhonghua Ni; Deyu Li; Yunfei Chen
Journal:  J Am Chem Soc       Date:  2019-02-26       Impact factor: 15.419

9.  Ionic memcapacitive effects in nanopores.

Authors:  Matt Krems; Yuriy V Pershin; Massimiliano Di Ventra
Journal:  Nano Lett       Date:  2010-07-14       Impact factor: 11.189

10.  Dehydration and ionic conductance quantization in nanopores.

Authors:  Michael Zwolak; James Wilson; Massimiliano Di Ventra
Journal:  J Phys Condens Matter       Date:  2010-11-17       Impact factor: 2.333

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