Literature DB >> 26839257

Decoding DNA, RNA and peptides with quantum tunnelling.

Massimiliano Di Ventra1, Masateru Taniguchi2.   

Abstract

Drugs and treatments could be precisely tailored to an individual patient by extracting their cellular- and molecular-level information. For this approach to be feasible on a global scale, however, information on complete genomes (DNA), transcriptomes (RNA) and proteomes (all proteins) needs to be obtained quickly and at low cost. Quantum mechanical phenomena could potentially be of value here, because the biological information needs to be decoded at an atomic level and quantum tunnelling has recently been shown to be able to differentiate single nucleobases and amino acids in short sequences. Here, we review the different approaches to using quantum tunnelling for sequencing, highlighting the theoretical background to the method and the experimental capabilities demonstrated to date. We also explore the potential advantages of the approach and the technical challenges that must be addressed to deliver practical quantum sequencing devices.

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Year:  2016        PMID: 26839257     DOI: 10.1038/nnano.2015.320

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  94 in total

1.  The accuracy of DNA sequences: estimating sequence quality.

Authors:  G A Churchill; M S Waterman
Journal:  Genomics       Date:  1992-09       Impact factor: 5.736

2.  Identifying single bases in a DNA oligomer with electron tunnelling.

Authors:  Shuo Huang; Jin He; Shuai Chang; Peiming Zhang; Feng Liang; Shengqin Li; Michael Tuchband; Alexander Fuhrmann; Robert Ros; Stuart Lindsay
Journal:  Nat Nanotechnol       Date:  2010-11-14       Impact factor: 39.213

3.  Identification of single nucleotides in MoS2 nanopores.

Authors:  Jiandong Feng; Ke Liu; Roman D Bulushev; Sergey Khlybov; Dumitru Dumcenco; Andras Kis; Aleksandra Radenovic
Journal:  Nat Nanotechnol       Date:  2015-09-21       Impact factor: 39.213

Review 4.  More than one reason to rethink the use of peptides in vaccine design.

Authors:  Anthony W Purcell; James McCluskey; Jamie Rossjohn
Journal:  Nat Rev Drug Discov       Date:  2007-05       Impact factor: 84.694

5.  DNA base detection using a single-layer MoS2.

Authors:  Amir Barati Farimani; Kyoungmin Min; Narayana R Aluru
Journal:  ACS Nano       Date:  2014-07-15       Impact factor: 15.881

Review 6.  Progress, challenges, and opportunities in two-dimensional materials beyond graphene.

Authors:  Sheneve Z Butler; Shawna M Hollen; Linyou Cao; Yi Cui; Jay A Gupta; Humberto R Gutiérrez; Tony F Heinz; Seung Sae Hong; Jiaxing Huang; Ariel F Ismach; Ezekiel Johnston-Halperin; Masaru Kuno; Vladimir V Plashnitsa; Richard D Robinson; Rodney S Ruoff; Sayeef Salahuddin; Jie Shan; Li Shi; Michael G Spencer; Mauricio Terrones; Wolfgang Windl; Joshua E Goldberger
Journal:  ACS Nano       Date:  2013-03-26       Impact factor: 15.881

7.  Quantized ionic conductance in nanopores.

Authors:  Michael Zwolak; Johan Lagerqvist; Massimiliano Di Ventra
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

8.  Graphene quantum point contact transistor for DNA sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

9.  Single-molecule electrical random resequencing of DNA and RNA.

Authors:  Takahito Ohshiro; Kazuki Matsubara; Makusu Tsutsui; Masayuki Furuhashi; Masateru Taniguchi; Tomoji Kawai
Journal:  Sci Rep       Date:  2012-07-10       Impact factor: 4.379

10.  A low-noise solid-state nanopore platform based on a highly insulating substrate.

Authors:  Min-Hyun Lee; Ashvani Kumar; Kyeong-Beom Park; Seong-Yong Cho; Hyun-Mi Kim; Min-Cheol Lim; Young-Rok Kim; Ki-Bum Kim
Journal:  Sci Rep       Date:  2014-12-12       Impact factor: 4.379

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  37 in total

Review 1.  Virulence factor activity relationships (VFARs): a bioinformatics perspective.

Authors:  Hassan Waseem; Maggie R Williams; Tiffany Stedtfeld; Benli Chai; Robert D Stedtfeld; James R Cole; James M Tiedje; Syed A Hashsham
Journal:  Environ Sci Process Impacts       Date:  2017-03-22       Impact factor: 4.238

2.  Pore translocation of knotted DNA rings.

Authors:  Antonio Suma; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

3.  Classification of DNA nucleotides with transverse tunneling currents.

Authors:  Jonas Nyvold Pedersen; Paul Boynton; Massimiliano Di Ventra; Antti-Pekka Jauho; Henrik Flyvbjerg
Journal:  Nanotechnology       Date:  2016-11-29       Impact factor: 3.874

Review 4.  Critical Review: digital resolution biomolecular sensing for diagnostics and life science research.

Authors:  Qinglan Huang; Nantao Li; Hanyuan Zhang; Congnyu Che; Fu Sun; Yanyu Xiong; Taylor D Canady; Brian T Cunningham
Journal:  Lab Chip       Date:  2020-07-23       Impact factor: 6.799

Review 5.  DNA sequencing at 40: past, present and future.

Authors:  Jay Shendure; Shankar Balasubramanian; George M Church; Walter Gilbert; Jane Rogers; Jeffery A Schloss; Robert H Waterston
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

Review 6.  Integrating Artificial Intelligence and Nanotechnology for Precision Cancer Medicine.

Authors:  Omer Adir; Maria Poley; Gal Chen; Sahar Froim; Nitzan Krinsky; Jeny Shklover; Janna Shainsky-Roitman; Twan Lammers; Avi Schroeder
Journal:  Adv Mater       Date:  2019-07-09       Impact factor: 30.849

Review 7.  Single-molecule protein sensing in a nanopore: a tutorial.

Authors:  Nitinun Varongchayakul; Jiaxi Song; Amit Meller; Mark W Grinstaff
Journal:  Chem Soc Rev       Date:  2018-11-26       Impact factor: 54.564

8.  2'-Deoxy-2'-fluoro-arabinonucleic acid: a valid alternative to DNA for biotechnological applications using charge transport.

Authors:  Ruijie D Teo; Elizabeth R Smithwick; Agostino Migliore
Journal:  Phys Chem Chem Phys       Date:  2019-10-24       Impact factor: 3.676

9.  Detection and Mapping of DNA Methylation with 2D Material Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Klaus Schulten; Jean-Pierre Leburton
Journal:  NPJ 2D Mater Appl       Date:  2017-04-11

10.  Optimal in situ electromechanical sensing of molecular species.

Authors:  Maicol A Ochoa; Michael Zwolak
Journal:  J Chem Phys       Date:  2020-01-21       Impact factor: 3.488

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